Zinc in PDB 6cb1: Yeast Nucleolar Pre-60S Ribosomal Subunit (State 3)

All present enzymatic activity of Yeast Nucleolar Pre-60S Ribosomal Subunit (State 3):
3.6.4.13;

The binding sites of Zinc atom in the Yeast Nucleolar Pre-60S Ribosomal Subunit (State 3) (pdb code 6cb1). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Yeast Nucleolar Pre-60S Ribosomal Subunit (State 3), PDB code: 6cb1:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Yeast Nucleolar Pre-60S Ribosomal Subunit (State 3)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Yeast Nucleolar Pre-60S Ribosomal Subunit (State 3) within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn401 b:0.4 occ:1.00 SG D:CYS38 2.1 28.0 1.0 SG D:CYS28 2.1 34.4 1.0 SG D:CYS43 2.1 24.6 1.0 SG D:CYS15 2.1 29.6 1.0 CB D:CYS38 3.4 78.0 1.0 CB D:CYS15 3.6 79.7 1.0 CB D:CYS28 3.9 84.4 1.0 CB D:CYS43 3.9 74.5 1.0 CA D:CYS38 4.3 53.4 1.0 CB D:ARG18 4.3 49.2 1.0 N D:ARG18 4.7 51.9 1.0 CA D:CYS28 4.7 53.7 1.0 CA D:CYS43 4.7 62.7 1.0 CA D:ARG18 4.8 51.9 1.0 C D:CYS38 5.0 53.4 1.0

Zinc binding site 2 out of 2 in the Yeast Nucleolar Pre-60S Ribosomal Subunit (State 3)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Yeast Nucleolar Pre-60S Ribosomal Subunit (State 3) within 5.0Å range: probe atom residue distance (Å) B Occ j:Zn101 b:74.8 occ:1.00 SG j:CYS37 2.1 68.5 1.0 SG j:CYS34 2.2 86.5 1.0 SG j:CYS22 2.2 85.0 1.0 SG j:CYS19 2.4 59.2 1.0 CB j:CYS34 3.0 0.5 1.0 CB j:CYS37 3.1 0.5 1.0 CB j:CYS19 3.1 0.2 1.0 CB j:CYS22 3.5 1.0 1.0 N j:CYS37 3.5 91.4 1.0 N j:CYS22 3.7 94.1 1.0 CA j:CYS37 3.8 91.4 1.0 CA j:CYS22 4.2 94.1 1.0 CB j:TYR39 4.3 88.4 1.0 CB j:ARG21 4.4 89.7 1.0 N j:GLY38 4.5 91.6 1.0 CA j:CYS34 4.5 93.8 1.0 C j:CYS37 4.5 91.4 1.0 CB j:SER36 4.5 88.1 1.0 N j:TYR39 4.5 94.1 1.0 CA j:CYS19 4.6 92.7 1.0 C j:SER36 4.7 94.9 1.0 C j:ARG21 4.8 87.2 1.0 N j:GLY23 4.8 92.6 1.0 C j:CYS22 4.9 94.1 1.0 N j:ARG21 4.9 87.2 1.0 CA j:ARG21 5.0 87.2 1.0 CA j:SER36 5.0 94.9 1.0

Z.A.Sanghai, L.Miller, K.R.Molloy, J.Barandun, M.Hunziker, M.Chaker-Margot, J.Wang, B.T.Chait, S.Klinge. Modular Assembly of the Nucleolar Pre-60S Ribosomal Subunit. Nature V. 556 126 2018.
ISSN: ESSN 1476-4687
PubMed: 29512650
DOI: 10.1038/NATURE26156