Zinc in PDB 6c72: Crystal Structure of A Tailspike Protein GP49 From Acinetobacter Baumannii Bacteriophage FRI1, A Capsular Polysaccharide Depolymerase

The structure of Crystal Structure of A Tailspike Protein GP49 From Acinetobacter Baumannii Bacteriophage FRI1, A Capsular Polysaccharide Depolymerase, PDB code: 6c72 was solved by S.A.Buth, A.Garcon, A.V.Popova, M.M.Shneider, P.G.Leiman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.33 / 2.40
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	73.462, 98.664, 148.704, 90.00, 91.81, 90.00
R / Rfree (%)	15.5 / 20.3

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 48;

Binding sites:

The binding sites of Zinc atom in the Crystal Structure of A Tailspike Protein GP49 From Acinetobacter Baumannii Bacteriophage FRI1, A Capsular Polysaccharide Depolymerase (pdb code 6c72). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 48 binding sites of Zinc where determined in the Crystal Structure of A Tailspike Protein GP49 From Acinetobacter Baumannii Bacteriophage FRI1, A Capsular Polysaccharide Depolymerase, PDB code: 6c72:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 48 in the Crystal Structure of A Tailspike Protein GP49 From Acinetobacter Baumannii Bacteriophage FRI1, A Capsular Polysaccharide Depolymerase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Tailspike Protein GP49 From Acinetobacter Baumannii Bacteriophage FRI1, A Capsular Polysaccharide Depolymerase within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn801 b:35.6 occ:1.00 NE2 A:HIS320 2.0 33.1 1.0 O A:HOH1262 2.0 31.5 1.0 O A:HOH1332 2.2 36.5 1.0 O A:HOH1320 2.5 32.5 1.0 O A:HOH1202 2.9 31.5 1.0 CD2 A:HIS320 3.0 32.8 1.0 CE1 A:HIS320 3.0 32.4 1.0 O A:HOH1270 3.5 31.6 1.0 O A:HOH1427 3.6 47.0 1.0 CE2 A:PHE366 3.9 31.8 1.0 CD2 A:PHE366 4.0 31.9 1.0 ND1 A:HIS320 4.1 31.7 1.0 CG A:HIS320 4.1 31.8 1.0 CZ A:PHE366 4.4 31.1 1.0 CG A:PHE366 4.7 31.3 1.0 N A:GLU289 4.9 34.3 1.0 CB A:GLU289 5.0 34.6 1.0

Zinc binding site 2 out of 48 in the Crystal Structure of A Tailspike Protein GP49 From Acinetobacter Baumannii Bacteriophage FRI1, A Capsular Polysaccharide Depolymerase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Tailspike Protein GP49 From Acinetobacter Baumannii Bacteriophage FRI1, A Capsular Polysaccharide Depolymerase within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn802 b:76.5 occ:1.00 ND1 A:HIS277 2.4 38.6 1.0 O A:HOH1113 2.6 18.2 1.0 O A:HOH1254 3.0 46.7 1.0 O A:HOH1158 3.0 34.0 1.0 CG A:HIS277 3.3 38.2 1.0 CE1 A:HIS277 3.4 39.9 1.0 CB A:HIS277 3.5 37.7 1.0 OG1 A:THR279 3.7 37.6 1.0 CG A:GLN315 4.2 34.0 1.0 CB A:PRO317 4.4 31.0 1.0 CD2 A:HIS277 4.5 39.2 1.0 CG2 A:THR279 4.5 40.4 1.0 NE2 A:HIS277 4.5 39.3 1.0 CA A:HIS277 4.5 37.8 1.0 CA A:PRO317 4.6 29.9 1.0 N A:PRO317 4.6 29.3 1.0 CB A:THR279 4.7 38.2 1.0 O A:GLN315 4.8 29.9 1.0 C A:LEU316 4.9 28.7 1.0 CB A:GLN315 4.9 33.5 1.0 O A:LEU316 5.0 28.8 1.0 CD A:PRO317 5.0 29.7 1.0

Zinc binding site 3 out of 48 in the Crystal Structure of A Tailspike Protein GP49 From Acinetobacter Baumannii Bacteriophage FRI1, A Capsular Polysaccharide Depolymerase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of A Tailspike Protein GP49 From Acinetobacter Baumannii Bacteriophage FRI1, A Capsular Polysaccharide Depolymerase within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn803 b:66.5 occ:1.00 O A:HOH1222 1.9 31.5 1.0 NE2 A:HIS277 2.0 39.3 1.0 O A:HOH1288 2.5 25.8 1.0 CE1 A:HIS277 2.8 39.9 1.0 CD2 A:HIS277 3.2 39.2 1.0 O A:HOH1138 3.4 31.9 1.0 O C:HOH1251 3.5 31.6 1.0 O C:HOH1367 3.7 31.1 1.0 N C:ASN273 4.0 53.1 1.0 ND1 A:HIS277 4.0 38.6 1.0 CG1 A:VAL275 4.1 33.8 1.0 CA C:ASN273 4.1 52.0 1.0 CG A:HIS277 4.2 38.2 1.0 ND2 C:ASN273 4.7 57.5 1.0 CB A:VAL275 4.8 34.3 1.0 C C:ASN273 5.0 48.4 1.0

Zinc binding site 4 out of 48 in the Crystal Structure of A Tailspike Protein GP49 From Acinetobacter Baumannii Bacteriophage FRI1, A Capsular Polysaccharide Depolymerase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of A Tailspike Protein GP49 From Acinetobacter Baumannii Bacteriophage FRI1, A Capsular Polysaccharide Depolymerase within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn804 b:40.8 occ:1.00 OD2 A:ASP682 2.1 37.4 1.0 O A:HOH1219 2.2 47.4 1.0 O A:HOH1121 2.4 49.2 1.0 CG A:ASP682 2.8 38.0 1.0 OD1 A:ASP682 2.9 37.8 1.0 CB A:ASP682 4.3 38.7 1.0 O A:HOH1083 4.6 39.8 1.0 CE A:LYS686 4.6 46.5 1.0 CD A:LYS686 4.7 45.6 1.0 CB A:ASN684 4.8 36.6 1.0 O A:ASN684 4.8 37.3 1.0 CB A:LYS686 4.9 45.5 1.0

Zinc binding site 5 out of 48 in the Crystal Structure of A Tailspike Protein GP49 From Acinetobacter Baumannii Bacteriophage FRI1, A Capsular Polysaccharide Depolymerase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of A Tailspike Protein GP49 From Acinetobacter Baumannii Bacteriophage FRI1, A Capsular Polysaccharide Depolymerase within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn805 b:39.0 occ:1.00 NE2 A:HIS464 2.0 30.3 1.0 O A:HOH1261 2.1 27.5 1.0 O A:HOH1256 2.3 24.1 1.0 O A:HOH1183 2.3 33.0 1.0 O A:HOH1145 2.3 38.9 1.0 CE1 A:HIS464 3.0 30.5 1.0 CD2 A:HIS464 3.1 29.6 1.0 OG A:SER439 3.8 40.7 1.0 O A:HOH1277 3.9 31.9 1.0 O A:HOH936 3.9 22.0 1.0 O B:HOH928 4.1 46.0 1.0 ND1 A:HIS464 4.1 29.9 1.0 CG A:HIS464 4.2 29.3 1.0 OG A:SER441 4.2 30.2 1.0 CB A:SER441 4.3 28.6 1.0 CB A:SER439 4.4 40.3 1.0 O B:HOH1060 4.5 43.6 1.0 CA A:SER439 4.5 39.1 1.0 NH2 B:ARG540 4.7 26.8 1.0 O A:HOH1333 4.7 37.1 1.0 CZ B:ARG540 4.9 26.7 1.0 N A:CYS440 4.9 30.3 1.0 OH A:TYR499 5.0 24.8 1.0

Zinc binding site 6 out of 48 in the Crystal Structure of A Tailspike Protein GP49 From Acinetobacter Baumannii Bacteriophage FRI1, A Capsular Polysaccharide Depolymerase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of A Tailspike Protein GP49 From Acinetobacter Baumannii Bacteriophage FRI1, A Capsular Polysaccharide Depolymerase within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn806 b:54.0 occ:1.00 O A:HOH1174 2.3 45.3 1.0 OE2 A:GLU610 2.3 33.5 1.0 OE1 A:GLU610 2.4 33.5 1.0 O A:HOH1242 2.5 25.4 1.0 CD A:GLU610 2.6 33.4 1.0 O A:HOH1370 2.8 48.8 1.0 O A:HOH1272 3.8 48.6 1.0 O A:HOH1287 3.8 37.1 1.0 O C:HOH1277 3.9 48.0 1.0 O A:HOH1299 3.9 48.8 1.0 CG A:GLU610 4.1 33.2 1.0 O A:HOH1168 4.2 44.2 1.0 NH2 A:ARG583 4.4 29.4 1.0 O A:HOH999 4.5 28.6 1.0 O C:HOH935 4.8 23.3 1.0 CD2 A:LEU608 4.9 27.7 1.0

Zinc binding site 7 out of 48 in the Crystal Structure of A Tailspike Protein GP49 From Acinetobacter Baumannii Bacteriophage FRI1, A Capsular Polysaccharide Depolymerase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Crystal Structure of A Tailspike Protein GP49 From Acinetobacter Baumannii Bacteriophage FRI1, A Capsular Polysaccharide Depolymerase within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn807 b:86.3 occ:1.00 NE2 A:HIS731 2.2 35.0 1.0 O A:HOH1317 2.9 31.6 1.0 CD2 A:HIS731 3.0 34.9 1.0 O A:HOH1175 3.1 42.9 1.0 CE1 A:HIS731 3.4 34.7 1.0 O A:HOH1345 3.8 31.5 1.0 CG A:HIS731 4.3 34.4 1.0 ND1 A:HIS731 4.4 34.4 1.0 OE2 A:GLU733 5.0 37.8 1.0

Zinc binding site 8 out of 48 in the Crystal Structure of A Tailspike Protein GP49 From Acinetobacter Baumannii Bacteriophage FRI1, A Capsular Polysaccharide Depolymerase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Crystal Structure of A Tailspike Protein GP49 From Acinetobacter Baumannii Bacteriophage FRI1, A Capsular Polysaccharide Depolymerase within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn808 b:68.0 occ:1.00 OE1 A:GLU564 2.1 29.2 1.0 O A:HOH1264 2.6 33.4 1.0 O A:HOH1424 2.6 31.0 1.0 O A:HOH1111 2.7 38.8 1.0 O A:HOH1344 3.0 42.8 1.0 CD A:GLU564 3.1 28.9 1.0 O A:HOH1395 3.4 45.4 1.0 OE2 A:GLU564 3.4 29.9 1.0 NE1 A:TRP590 3.8 28.2 1.0 O A:HOH1205 4.1 42.1 1.0 CE2 A:TRP590 4.4 28.9 1.0 CG A:GLU564 4.5 27.7 1.0 O A:HOH1445 4.5 31.5 1.0 CZ2 A:TRP590 4.5 29.8 1.0 O A:HOH1354 4.5 47.0 1.0 NZ A:LYS592 4.5 34.4 1.0 CD1 A:TRP590 4.6 27.7 1.0 CD A:ARG540 4.6 25.8 1.0 CB A:GLU564 4.8 27.2 1.0 O A:HOH1386 4.8 31.5 1.0 O A:HOH1030 4.8 27.2 1.0

Zinc binding site 9 out of 48 in the Crystal Structure of A Tailspike Protein GP49 From Acinetobacter Baumannii Bacteriophage FRI1, A Capsular Polysaccharide Depolymerase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Crystal Structure of A Tailspike Protein GP49 From Acinetobacter Baumannii Bacteriophage FRI1, A Capsular Polysaccharide Depolymerase within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn809 b:74.0 occ:1.00 OD1 A:ASN761 2.1 35.0 1.0 O A:HOH1305 2.3 35.7 1.0 OD1 A:ASP705 2.4 35.1 1.0 OG1 A:THR707 2.7 37.5 1.0 OD2 A:ASP705 2.8 34.2 1.0 O A:HOH1284 2.8 33.0 1.0 O A:SER759 2.8 33.5 1.0 CG A:ASP705 2.9 34.7 1.0 CG A:ASN761 3.2 34.5 1.0 ND2 A:ASN761 3.7 34.0 1.0 CB A:THR707 3.9 38.2 1.0 O A:HOH1106 3.9 34.9 1.0 C A:SER759 3.9 33.5 1.0 OG1 A:THR762 4.1 31.2 1.0 N A:ASN761 4.1 34.3 1.0 N A:THR707 4.4 37.6 1.0 CB A:ASP705 4.4 34.9 1.0 CB A:ASN761 4.5 34.2 1.0 N A:THR762 4.6 30.9 1.0 CA A:SER759 4.7 34.0 1.0 CA A:THR707 4.7 38.5 1.0 CA A:ASN761 4.8 33.6 1.0 N A:ALA760 4.8 26.7 1.0 N A:ALA706 4.8 33.2 1.0 CA A:ALA760 4.9 26.1 1.0 O A:LEU758 4.9 28.8 1.0 CB A:THR762 4.9 30.8 1.0 CG2 A:THR707 5.0 39.0 1.0 CA A:ASP705 5.0 34.4 1.0

Zinc binding site 10 out of 48 in the Crystal Structure of A Tailspike Protein GP49 From Acinetobacter Baumannii Bacteriophage FRI1, A Capsular Polysaccharide Depolymerase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Crystal Structure of A Tailspike Protein GP49 From Acinetobacter Baumannii Bacteriophage FRI1, A Capsular Polysaccharide Depolymerase within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn810 b:56.7 occ:0.58 ZN A:ZN810 0.0 56.7 0.6 ZN A:ZN810 1.9 44.3 0.4 O C:HOH946 2.2 31.5 1.0 OE2 A:GLU446 2.4 31.9 1.0 O A:HOH1204 2.6 31.5 1.0 O A:HOH1392 2.7 47.4 1.0 CD A:GLU446 3.1 31.9 1.0 OE1 A:GLU446 3.1 32.8 1.0 O A:HOH1003 3.4 31.9 1.0 O A:HOH1218 3.8 34.2 1.0 O A:HOH918 3.9 31.5 1.0 O C:HOH956 3.9 24.8 1.0 OD1 C:ASN442 4.0 24.8 1.0 CD A:LYS469 4.1 38.4 1.0 CE A:LYS469 4.4 38.9 1.0 ND2 C:ASN442 4.5 25.2 1.0 CG A:GLU446 4.5 30.5 1.0 OH A:TYR444 4.5 30.9 1.0 CB C:TYR444 4.6 28.6 1.0 O A:HOH1312 4.6 46.9 1.0 CG C:ASN442 4.6 24.7 1.0 CG C:TYR444 4.9 28.7 1.0

S.A.Buth, M.M.Shneider, A.V.Popova, A.S.Shashkov, S.N.Senchenkova, Y.Knirel, P.G.Leiman. Exopolysaccharide Degrading Enzymes - Specificity Determinants of Acinetobacter Baumannii Phages To Be Published.