Zinc in PDB 6bhk: Phosphotriesterase Variant R18DELTAL7
Protein crystallography data
The structure of Phosphotriesterase Variant R18DELTAL7, PDB code: 6bhk
was solved by
C.M.Miton,
E.C.Campbell,
C.J.Jackson,
N.Tokuriki,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.96 /
1.40
|
Space group
|
P 21 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
85.757,
86.164,
177.670,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
16 /
18
|
Zinc Binding Sites:
The binding sites of Zinc atom in the Phosphotriesterase Variant R18DELTAL7
(pdb code 6bhk). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 8 binding sites of Zinc where determined in the
Phosphotriesterase Variant R18DELTAL7, PDB code: 6bhk:
Jump to Zinc binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Zinc binding site 1 out
of 8 in 6bhk
Go back to
Zinc Binding Sites List in 6bhk
Zinc binding site 1 out
of 8 in the Phosphotriesterase Variant R18DELTAL7
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Phosphotriesterase Variant R18DELTAL7 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn2401
b:16.2
occ:1.00
|
O
|
A:HOH2531
|
2.0
|
17.2
|
1.0
|
NE2
|
A:HIS57
|
2.1
|
15.8
|
1.0
|
NE2
|
A:HIS55
|
2.1
|
15.5
|
1.0
|
OQ2
|
A:KCX169
|
2.2
|
16.2
|
1.0
|
OD1
|
A:ASP292
|
2.2
|
15.8
|
1.0
|
CE1
|
A:HIS57
|
3.0
|
15.7
|
1.0
|
CD2
|
A:HIS55
|
3.0
|
14.5
|
1.0
|
CX
|
A:KCX169
|
3.0
|
17.8
|
1.0
|
CG
|
A:ASP292
|
3.1
|
17.4
|
1.0
|
CD2
|
A:HIS57
|
3.1
|
14.8
|
1.0
|
CE1
|
A:HIS55
|
3.1
|
15.3
|
1.0
|
HD2
|
A:HIS55
|
3.1
|
17.4
|
1.0
|
HE1
|
A:HIS57
|
3.2
|
18.9
|
1.0
|
ZN
|
A:ZN2402
|
3.3
|
18.6
|
1.0
|
H13
|
A:MPD2403
|
3.3
|
29.1
|
1.0
|
HD2
|
A:HIS57
|
3.3
|
17.8
|
1.0
|
OD2
|
A:ASP292
|
3.3
|
17.4
|
1.0
|
HE1
|
A:HIS55
|
3.4
|
18.4
|
1.0
|
OQ1
|
A:KCX169
|
3.4
|
17.9
|
1.0
|
HG23
|
A:VAL101
|
3.5
|
18.3
|
1.0
|
HE1
|
A:HIS230
|
3.6
|
21.5
|
1.0
|
H4
|
A:MPD2403
|
3.8
|
50.9
|
1.0
|
HG21
|
A:VAL101
|
3.9
|
18.3
|
1.0
|
O2
|
A:MPD2403
|
4.0
|
37.3
|
1.0
|
CG2
|
A:VAL101
|
4.0
|
15.2
|
1.0
|
ND1
|
A:HIS57
|
4.1
|
14.9
|
1.0
|
NZ
|
A:KCX169
|
4.1
|
20.0
|
1.0
|
H32
|
A:MPD2403
|
4.2
|
44.8
|
1.0
|
HG22
|
A:VAL101
|
4.2
|
18.3
|
1.0
|
C1
|
A:MPD2403
|
4.2
|
24.2
|
1.0
|
CG
|
A:HIS55
|
4.2
|
15.0
|
1.0
|
ND1
|
A:HIS55
|
4.2
|
15.6
|
1.0
|
CG
|
A:HIS57
|
4.2
|
14.3
|
1.0
|
CE1
|
A:HIS230
|
4.3
|
17.9
|
1.0
|
HZ
|
A:KCX169
|
4.3
|
24.0
|
1.0
|
NE2
|
A:HIS230
|
4.3
|
18.6
|
1.0
|
HA
|
A:ASP292
|
4.4
|
17.3
|
1.0
|
CB
|
A:ASP292
|
4.4
|
15.6
|
1.0
|
C2
|
A:MPD2403
|
4.5
|
34.7
|
1.0
|
HO2
|
A:MPD2403
|
4.5
|
44.8
|
1.0
|
HB2
|
A:ASP292
|
4.5
|
18.7
|
1.0
|
H12
|
A:MPD2403
|
4.6
|
29.1
|
1.0
|
C3
|
A:MPD2403
|
4.6
|
37.3
|
1.0
|
C4
|
A:MPD2403
|
4.6
|
42.4
|
1.0
|
H11
|
A:MPD2403
|
4.8
|
29.1
|
1.0
|
CA
|
A:ASP292
|
4.9
|
14.4
|
1.0
|
HD1
|
A:HIS57
|
4.9
|
17.9
|
1.0
|
|
Zinc binding site 2 out
of 8 in 6bhk
Go back to
Zinc Binding Sites List in 6bhk
Zinc binding site 2 out
of 8 in the Phosphotriesterase Variant R18DELTAL7
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Phosphotriesterase Variant R18DELTAL7 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn2402
b:18.6
occ:0.99
|
O
|
A:HOH2531
|
1.9
|
17.2
|
1.0
|
OQ1
|
A:KCX169
|
2.0
|
17.9
|
1.0
|
ND1
|
A:HIS201
|
2.0
|
21.4
|
1.0
|
NE2
|
A:HIS230
|
2.0
|
18.6
|
1.0
|
CX
|
A:KCX169
|
2.9
|
17.8
|
1.0
|
CE1
|
A:HIS201
|
2.9
|
23.4
|
1.0
|
CE1
|
A:HIS230
|
3.0
|
17.9
|
1.0
|
HB2
|
A:HIS201
|
3.0
|
21.6
|
1.0
|
HE1
|
A:HIS201
|
3.0
|
28.1
|
1.0
|
CD2
|
A:HIS230
|
3.1
|
20.1
|
1.0
|
CG
|
A:HIS201
|
3.1
|
20.3
|
1.0
|
HE1
|
A:HIS55
|
3.1
|
18.4
|
1.0
|
HE1
|
A:HIS230
|
3.2
|
21.5
|
1.0
|
OQ2
|
A:KCX169
|
3.2
|
16.2
|
1.0
|
H13
|
A:MPD2403
|
3.2
|
29.1
|
1.0
|
HD2
|
A:HIS230
|
3.3
|
24.1
|
1.0
|
ZN
|
A:ZN2401
|
3.3
|
16.2
|
1.0
|
HE1
|
A:TRP131
|
3.4
|
30.9
|
1.0
|
CB
|
A:HIS201
|
3.5
|
18.0
|
1.0
|
CE1
|
A:HIS55
|
3.7
|
15.3
|
1.0
|
NE2
|
A:HIS55
|
3.8
|
15.5
|
1.0
|
HA
|
A:HIS201
|
3.8
|
24.7
|
1.0
|
H12
|
A:MPD2403
|
3.9
|
29.1
|
1.0
|
C1
|
A:MPD2403
|
4.0
|
24.2
|
1.0
|
OD2
|
A:ASP292
|
4.0
|
17.4
|
1.0
|
NE2
|
A:HIS201
|
4.1
|
24.2
|
1.0
|
NZ
|
A:KCX169
|
4.1
|
20.0
|
1.0
|
ND1
|
A:HIS230
|
4.1
|
18.9
|
1.0
|
CD2
|
A:HIS201
|
4.2
|
24.9
|
1.0
|
HE2
|
A:KCX169
|
4.2
|
25.3
|
1.0
|
CG
|
A:HIS230
|
4.2
|
18.1
|
1.0
|
NE1
|
A:TRP131
|
4.2
|
25.8
|
1.0
|
CA
|
A:HIS201
|
4.3
|
20.6
|
1.0
|
HB3
|
A:HIS201
|
4.3
|
21.6
|
1.0
|
H11
|
A:MPD2403
|
4.4
|
29.1
|
1.0
|
HD2
|
A:ARG254
|
4.5
|
26.5
|
1.0
|
CE
|
A:KCX169
|
4.6
|
21.1
|
1.0
|
HE3
|
A:KCX169
|
4.6
|
25.3
|
1.0
|
OD1
|
A:ASP292
|
4.7
|
15.8
|
1.0
|
HD1
|
A:TRP131
|
4.7
|
28.9
|
1.0
|
CG
|
A:ASP292
|
4.7
|
17.4
|
1.0
|
HE2
|
A:HIS201
|
4.8
|
29.1
|
1.0
|
HZ
|
A:KCX169
|
4.8
|
24.0
|
1.0
|
CD1
|
A:TRP131
|
4.9
|
24.1
|
1.0
|
H4
|
A:MPD2403
|
4.9
|
50.9
|
1.0
|
HH11
|
A:ARG254
|
4.9
|
32.8
|
1.0
|
HD1
|
A:HIS230
|
4.9
|
22.7
|
1.0
|
ND1
|
A:HIS55
|
4.9
|
15.6
|
1.0
|
|
Zinc binding site 3 out
of 8 in 6bhk
Go back to
Zinc Binding Sites List in 6bhk
Zinc binding site 3 out
of 8 in the Phosphotriesterase Variant R18DELTAL7
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Phosphotriesterase Variant R18DELTAL7 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Zn2401
b:18.4
occ:1.00
|
O
|
G:HOH2503
|
1.9
|
20.8
|
1.0
|
NE2
|
G:HIS57
|
2.1
|
18.2
|
1.0
|
NE2
|
G:HIS55
|
2.1
|
17.9
|
1.0
|
OQ1
|
G:KCX169
|
2.1
|
19.6
|
1.0
|
OD1
|
G:ASP292
|
2.2
|
17.6
|
1.0
|
CX
|
G:KCX169
|
3.0
|
19.7
|
1.0
|
CE1
|
G:HIS57
|
3.0
|
16.8
|
1.0
|
CD2
|
G:HIS55
|
3.0
|
15.8
|
1.0
|
HM1
|
G:MPD2403
|
3.1
|
29.8
|
0.7
|
CG
|
G:ASP292
|
3.1
|
19.9
|
1.0
|
CD2
|
G:HIS57
|
3.1
|
18.1
|
1.0
|
CE1
|
G:HIS55
|
3.1
|
17.3
|
1.0
|
HE1
|
G:HIS57
|
3.1
|
20.1
|
1.0
|
HD2
|
G:HIS55
|
3.1
|
18.9
|
1.0
|
HM1
|
G:MPD2403
|
3.2
|
30.4
|
0.3
|
ZN
|
G:ZN2402
|
3.3
|
21.4
|
1.0
|
HD2
|
G:HIS57
|
3.3
|
21.8
|
1.0
|
OQ2
|
G:KCX169
|
3.3
|
18.8
|
1.0
|
H32
|
G:MPD2403
|
3.4
|
32.8
|
0.7
|
HE1
|
G:HIS55
|
3.4
|
20.7
|
1.0
|
OD2
|
G:ASP292
|
3.4
|
19.2
|
1.0
|
HG23
|
G:VAL101
|
3.4
|
21.3
|
1.0
|
H4
|
G:MPD2403
|
3.5
|
33.9
|
0.3
|
HE1
|
G:HIS230
|
3.6
|
26.2
|
1.0
|
O2
|
G:MPD2403
|
3.7
|
25.1
|
0.3
|
HG21
|
G:VAL101
|
3.8
|
21.3
|
1.0
|
HO2
|
G:MPD2403
|
3.9
|
30.2
|
0.3
|
CG2
|
G:VAL101
|
3.9
|
17.8
|
1.0
|
CM
|
G:MPD2403
|
4.0
|
24.9
|
0.7
|
H31
|
G:MPD2403
|
4.0
|
32.2
|
0.3
|
HG22
|
G:VAL101
|
4.1
|
21.3
|
1.0
|
CM
|
G:MPD2403
|
4.1
|
25.4
|
0.3
|
ND1
|
G:HIS57
|
4.1
|
16.8
|
1.0
|
HO2
|
G:MPD2403
|
4.2
|
32.3
|
0.7
|
NZ
|
G:KCX169
|
4.2
|
21.5
|
1.0
|
CE1
|
G:HIS230
|
4.2
|
21.8
|
1.0
|
CG
|
G:HIS55
|
4.2
|
17.0
|
1.0
|
ND1
|
G:HIS55
|
4.2
|
17.7
|
1.0
|
NE2
|
G:HIS230
|
4.2
|
19.6
|
1.0
|
CG
|
G:HIS57
|
4.2
|
17.7
|
1.0
|
C3
|
G:MPD2403
|
4.2
|
27.3
|
0.7
|
C2
|
G:MPD2403
|
4.3
|
25.0
|
0.3
|
C4
|
G:MPD2403
|
4.3
|
28.2
|
0.3
|
HM3
|
G:MPD2403
|
4.3
|
29.8
|
0.7
|
O2
|
G:MPD2403
|
4.3
|
26.9
|
0.7
|
HZ
|
G:KCX169
|
4.4
|
25.8
|
1.0
|
C3
|
G:MPD2403
|
4.4
|
26.8
|
0.3
|
HA
|
G:ASP292
|
4.4
|
22.0
|
1.0
|
CB
|
G:ASP292
|
4.4
|
17.7
|
1.0
|
C2
|
G:MPD2403
|
4.5
|
23.4
|
0.7
|
HB2
|
G:ASP292
|
4.5
|
21.3
|
1.0
|
HM2
|
G:MPD2403
|
4.6
|
30.4
|
0.3
|
HM2
|
G:MPD2403
|
4.6
|
29.8
|
0.7
|
HO4
|
G:MPD2403
|
4.6
|
33.2
|
0.3
|
HH21
|
G:ARG254
|
4.7
|
22.9
|
0.7
|
HM3
|
G:MPD2403
|
4.7
|
30.4
|
0.3
|
H31
|
G:MPD2403
|
4.8
|
32.8
|
0.7
|
O4
|
G:MPD2403
|
4.8
|
26.7
|
0.7
|
HD1
|
G:HIS57
|
4.9
|
20.2
|
1.0
|
CA
|
G:ASP292
|
4.9
|
18.3
|
1.0
|
O4
|
G:MPD2403
|
4.9
|
27.6
|
0.3
|
|
Zinc binding site 4 out
of 8 in 6bhk
Go back to
Zinc Binding Sites List in 6bhk
Zinc binding site 4 out
of 8 in the Phosphotriesterase Variant R18DELTAL7
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Phosphotriesterase Variant R18DELTAL7 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Zn2402
b:21.4
occ:1.00
|
OQ2
|
G:KCX169
|
1.9
|
18.8
|
1.0
|
ND1
|
G:HIS201
|
2.0
|
20.2
|
1.0
|
O
|
G:HOH2503
|
2.0
|
20.8
|
1.0
|
NE2
|
G:HIS230
|
2.0
|
19.6
|
1.0
|
CX
|
G:KCX169
|
2.9
|
19.7
|
1.0
|
CE1
|
G:HIS201
|
2.9
|
22.1
|
1.0
|
HB2
|
G:HIS201
|
3.0
|
23.1
|
1.0
|
HE1
|
G:HIS201
|
3.0
|
26.4
|
1.0
|
CD2
|
G:HIS230
|
3.0
|
23.1
|
1.0
|
CE1
|
G:HIS230
|
3.0
|
21.8
|
1.0
|
CG
|
G:HIS201
|
3.1
|
20.0
|
1.0
|
HO2
|
G:MPD2403
|
3.1
|
30.2
|
0.3
|
HE1
|
G:HIS55
|
3.2
|
20.7
|
1.0
|
HD2
|
G:HIS230
|
3.2
|
27.8
|
1.0
|
OQ1
|
G:KCX169
|
3.2
|
19.6
|
1.0
|
HE1
|
G:HIS230
|
3.2
|
26.2
|
1.0
|
ZN
|
G:ZN2401
|
3.3
|
18.4
|
1.0
|
O2
|
G:MPD2403
|
3.4
|
25.1
|
0.3
|
HE1
|
G:TRP131
|
3.5
|
28.3
|
1.0
|
CB
|
G:HIS201
|
3.5
|
19.2
|
1.0
|
HH21
|
G:ARG254
|
3.6
|
22.9
|
0.7
|
HO2
|
G:MPD2403
|
3.7
|
32.3
|
0.7
|
CE1
|
G:HIS55
|
3.7
|
17.3
|
1.0
|
NE2
|
G:HIS55
|
3.7
|
17.9
|
1.0
|
NH2
|
G:ARG254
|
3.9
|
19.0
|
0.7
|
NE2
|
G:HIS201
|
4.1
|
23.9
|
1.0
|
OD2
|
G:ASP292
|
4.1
|
19.2
|
1.0
|
ND1
|
G:HIS230
|
4.1
|
22.2
|
1.0
|
HH22
|
G:ARG254
|
4.1
|
22.9
|
0.7
|
O2
|
G:MPD2403
|
4.1
|
26.9
|
0.7
|
NZ
|
G:KCX169
|
4.1
|
21.5
|
1.0
|
CG
|
G:HIS230
|
4.2
|
21.9
|
1.0
|
CD2
|
G:HIS201
|
4.2
|
23.5
|
1.0
|
HE2
|
G:KCX169
|
4.2
|
26.0
|
1.0
|
HB3
|
G:HIS201
|
4.2
|
23.1
|
1.0
|
HM1
|
G:MPD2403
|
4.3
|
29.8
|
0.7
|
HA
|
G:HIS201
|
4.3
|
25.7
|
1.0
|
NE1
|
G:TRP131
|
4.3
|
23.6
|
1.0
|
CZ
|
G:ARG254
|
4.5
|
22.5
|
0.7
|
H4
|
G:MPD2403
|
4.5
|
33.9
|
0.3
|
HE
|
G:ARG254
|
4.5
|
28.2
|
0.7
|
HM1
|
G:MPD2403
|
4.5
|
30.4
|
0.3
|
CA
|
G:HIS201
|
4.5
|
21.4
|
1.0
|
CE
|
G:KCX169
|
4.6
|
21.6
|
1.0
|
HD2
|
G:ARG254
|
4.6
|
28.1
|
0.3
|
OD1
|
G:ASP292
|
4.6
|
17.6
|
1.0
|
CG
|
G:ASP292
|
4.7
|
19.9
|
1.0
|
HE3
|
G:KCX169
|
4.7
|
26.0
|
1.0
|
NE
|
G:ARG254
|
4.7
|
23.5
|
0.7
|
C2
|
G:MPD2403
|
4.7
|
25.0
|
0.3
|
HE2
|
G:HIS201
|
4.8
|
28.6
|
1.0
|
HZ
|
G:KCX169
|
4.8
|
25.8
|
1.0
|
HD1
|
G:TRP131
|
4.9
|
27.5
|
1.0
|
HD1
|
G:HIS230
|
4.9
|
26.7
|
1.0
|
HM2
|
G:MPD2403
|
4.9
|
30.4
|
0.3
|
ND1
|
G:HIS55
|
4.9
|
17.7
|
1.0
|
CM
|
G:MPD2403
|
5.0
|
25.4
|
0.3
|
H51
|
G:MPD2403
|
5.0
|
34.2
|
0.3
|
|
Zinc binding site 5 out
of 8 in 6bhk
Go back to
Zinc Binding Sites List in 6bhk
Zinc binding site 5 out
of 8 in the Phosphotriesterase Variant R18DELTAL7
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of Phosphotriesterase Variant R18DELTAL7 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn2401
b:16.8
occ:1.00
|
NE2
|
B:HIS57
|
2.1
|
15.6
|
1.0
|
O
|
B:HOH2549
|
2.1
|
16.9
|
1.0
|
NE2
|
B:HIS55
|
2.1
|
16.0
|
1.0
|
OD1
|
B:ASP292
|
2.2
|
16.3
|
1.0
|
OQ1
|
B:KCX169
|
2.2
|
17.2
|
1.0
|
CE1
|
B:HIS57
|
3.0
|
15.4
|
1.0
|
CD2
|
B:HIS55
|
3.0
|
14.8
|
1.0
|
CX
|
B:KCX169
|
3.1
|
18.8
|
1.0
|
CG
|
B:ASP292
|
3.1
|
17.4
|
1.0
|
HE1
|
B:HIS57
|
3.1
|
18.5
|
1.0
|
CD2
|
B:HIS57
|
3.1
|
15.2
|
1.0
|
HD2
|
B:HIS55
|
3.1
|
17.7
|
1.0
|
CE1
|
B:HIS55
|
3.2
|
18.3
|
1.0
|
ZN
|
B:ZN2402
|
3.3
|
18.5
|
0.9
|
HD2
|
B:HIS57
|
3.3
|
18.3
|
1.0
|
H13
|
B:MPD2403
|
3.4
|
33.6
|
1.0
|
OD2
|
B:ASP292
|
3.4
|
18.1
|
1.0
|
OQ2
|
B:KCX169
|
3.4
|
18.1
|
1.0
|
HE1
|
B:HIS55
|
3.4
|
22.0
|
1.0
|
HG23
|
B:VAL101
|
3.5
|
19.9
|
1.0
|
HE1
|
B:HIS230
|
3.6
|
23.0
|
1.0
|
H4
|
B:MPD2403
|
3.7
|
52.1
|
1.0
|
HG21
|
B:VAL101
|
3.8
|
19.9
|
1.0
|
CG2
|
B:VAL101
|
4.0
|
16.6
|
1.0
|
O2
|
B:MPD2403
|
4.0
|
33.9
|
1.0
|
ND1
|
B:HIS57
|
4.1
|
15.7
|
1.0
|
HG22
|
B:VAL101
|
4.2
|
19.9
|
1.0
|
NZ
|
B:KCX169
|
4.2
|
20.8
|
1.0
|
CG
|
B:HIS55
|
4.2
|
15.3
|
1.0
|
CG
|
B:HIS57
|
4.2
|
14.5
|
1.0
|
C1
|
B:MPD2403
|
4.2
|
28.0
|
1.0
|
ND1
|
B:HIS55
|
4.2
|
17.5
|
1.0
|
CE1
|
B:HIS230
|
4.3
|
19.1
|
1.0
|
NE2
|
B:HIS230
|
4.3
|
19.5
|
1.0
|
HZ
|
B:KCX169
|
4.3
|
24.9
|
1.0
|
HA
|
B:ASP292
|
4.4
|
18.2
|
1.0
|
CB
|
B:ASP292
|
4.4
|
15.4
|
1.0
|
H31
|
B:MPD2403
|
4.4
|
44.8
|
1.0
|
HO2
|
B:MPD2403
|
4.4
|
40.6
|
1.0
|
C2
|
B:MPD2403
|
4.5
|
36.5
|
1.0
|
HB2
|
B:ASP292
|
4.6
|
18.5
|
1.0
|
C4
|
B:MPD2403
|
4.6
|
43.4
|
1.0
|
H11
|
B:MPD2403
|
4.6
|
33.6
|
1.0
|
C3
|
B:MPD2403
|
4.7
|
37.3
|
1.0
|
HO4
|
B:MPD2403
|
4.9
|
46.3
|
1.0
|
HD1
|
B:HIS57
|
4.9
|
18.9
|
1.0
|
H12
|
B:MPD2403
|
4.9
|
33.6
|
1.0
|
CA
|
B:ASP292
|
4.9
|
15.2
|
1.0
|
|
Zinc binding site 6 out
of 8 in 6bhk
Go back to
Zinc Binding Sites List in 6bhk
Zinc binding site 6 out
of 8 in the Phosphotriesterase Variant R18DELTAL7
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of Phosphotriesterase Variant R18DELTAL7 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn2402
b:18.5
occ:0.94
|
O
|
B:HOH2549
|
1.9
|
16.9
|
1.0
|
OQ2
|
B:KCX169
|
1.9
|
18.1
|
1.0
|
ND1
|
B:HIS201
|
2.0
|
20.3
|
1.0
|
NE2
|
B:HIS230
|
2.0
|
19.5
|
1.0
|
CE1
|
B:HIS201
|
2.9
|
25.1
|
1.0
|
CX
|
B:KCX169
|
2.9
|
18.8
|
1.0
|
HE1
|
B:HIS201
|
3.0
|
30.1
|
1.0
|
CE1
|
B:HIS230
|
3.0
|
19.1
|
1.0
|
CD2
|
B:HIS230
|
3.1
|
20.6
|
1.0
|
HB2
|
B:HIS201
|
3.1
|
24.7
|
1.0
|
CG
|
B:HIS201
|
3.1
|
20.4
|
1.0
|
HE1
|
B:HIS230
|
3.1
|
23.0
|
1.0
|
OQ1
|
B:KCX169
|
3.2
|
17.2
|
1.0
|
HE1
|
B:HIS55
|
3.2
|
22.0
|
1.0
|
ZN
|
B:ZN2401
|
3.3
|
16.8
|
1.0
|
HD2
|
B:HIS230
|
3.3
|
24.7
|
1.0
|
H13
|
B:MPD2403
|
3.3
|
33.6
|
1.0
|
HE1
|
B:TRP131
|
3.4
|
31.4
|
1.0
|
CB
|
B:HIS201
|
3.6
|
20.6
|
1.0
|
CE1
|
B:HIS55
|
3.7
|
18.3
|
1.0
|
NE2
|
B:HIS55
|
3.7
|
16.0
|
1.0
|
HA
|
B:HIS201
|
3.8
|
25.9
|
1.0
|
H11
|
B:MPD2403
|
3.9
|
33.6
|
1.0
|
OD2
|
B:ASP292
|
4.0
|
18.1
|
1.0
|
NE2
|
B:HIS201
|
4.0
|
24.2
|
1.0
|
C1
|
B:MPD2403
|
4.0
|
28.0
|
1.0
|
ND1
|
B:HIS230
|
4.1
|
19.7
|
1.0
|
NZ
|
B:KCX169
|
4.1
|
20.8
|
1.0
|
CD2
|
B:HIS201
|
4.2
|
25.1
|
1.0
|
CG
|
B:HIS230
|
4.2
|
18.6
|
1.0
|
HE2
|
B:KCX169
|
4.2
|
24.5
|
1.0
|
NE1
|
B:TRP131
|
4.2
|
26.1
|
1.0
|
CA
|
B:HIS201
|
4.2
|
21.6
|
1.0
|
HB3
|
B:HIS201
|
4.4
|
24.7
|
1.0
|
H12
|
B:MPD2403
|
4.5
|
33.6
|
1.0
|
HD2
|
B:ARG254
|
4.5
|
26.4
|
1.0
|
CE
|
B:KCX169
|
4.6
|
20.4
|
1.0
|
OD1
|
B:ASP292
|
4.6
|
16.3
|
1.0
|
HE3
|
B:KCX169
|
4.7
|
24.5
|
1.0
|
CG
|
B:ASP292
|
4.7
|
17.4
|
1.0
|
HD1
|
B:TRP131
|
4.7
|
29.9
|
1.0
|
HE2
|
B:HIS201
|
4.8
|
29.0
|
1.0
|
HZ
|
B:KCX169
|
4.8
|
24.9
|
1.0
|
CD1
|
B:TRP131
|
4.9
|
24.9
|
1.0
|
H4
|
B:MPD2403
|
4.9
|
52.1
|
1.0
|
HD1
|
B:HIS230
|
4.9
|
23.7
|
1.0
|
HH11
|
B:ARG254
|
4.9
|
36.6
|
1.0
|
ND1
|
B:HIS55
|
4.9
|
17.5
|
1.0
|
|
Zinc binding site 7 out
of 8 in 6bhk
Go back to
Zinc Binding Sites List in 6bhk
Zinc binding site 7 out
of 8 in the Phosphotriesterase Variant R18DELTAL7
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 7 of Phosphotriesterase Variant R18DELTAL7 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Zn2401
b:19.3
occ:1.00
|
O
|
E:HOH2522
|
1.9
|
22.6
|
1.0
|
NE2
|
E:HIS57
|
2.1
|
20.3
|
1.0
|
NE2
|
E:HIS55
|
2.1
|
18.6
|
1.0
|
OQ2
|
E:KCX169
|
2.1
|
20.0
|
1.0
|
OD1
|
E:ASP292
|
2.2
|
20.1
|
1.0
|
CE1
|
E:HIS57
|
3.0
|
17.9
|
1.0
|
CX
|
E:KCX169
|
3.0
|
19.4
|
1.0
|
CD2
|
E:HIS55
|
3.0
|
17.3
|
1.0
|
HM3
|
E:MPD2404
|
3.0
|
36.1
|
1.0
|
CG
|
E:ASP292
|
3.1
|
19.7
|
1.0
|
HE1
|
E:HIS57
|
3.1
|
21.5
|
1.0
|
CD2
|
E:HIS57
|
3.1
|
19.1
|
1.0
|
HD2
|
E:HIS55
|
3.1
|
20.7
|
1.0
|
CE1
|
E:HIS55
|
3.2
|
19.7
|
1.0
|
ZN
|
E:ZN2402
|
3.3
|
23.2
|
1.0
|
HD2
|
E:HIS57
|
3.4
|
22.9
|
1.0
|
OQ1
|
E:KCX169
|
3.4
|
20.9
|
1.0
|
OD2
|
E:ASP292
|
3.4
|
21.1
|
1.0
|
HE1
|
E:HIS55
|
3.4
|
23.6
|
1.0
|
H31
|
E:MPD2404
|
3.4
|
45.1
|
1.0
|
HG23
|
E:VAL101
|
3.5
|
21.5
|
1.0
|
HE1
|
E:HIS230
|
3.6
|
26.7
|
1.0
|
HG21
|
E:VAL101
|
3.9
|
21.5
|
1.0
|
CM
|
E:MPD2404
|
4.0
|
30.1
|
1.0
|
O2
|
E:MPD2404
|
4.0
|
36.5
|
1.0
|
CG2
|
E:VAL101
|
4.0
|
17.9
|
1.0
|
HG22
|
E:VAL101
|
4.1
|
21.5
|
1.0
|
ND1
|
E:HIS57
|
4.1
|
17.6
|
1.0
|
NZ
|
E:KCX169
|
4.2
|
19.9
|
1.0
|
CE1
|
E:HIS230
|
4.2
|
22.3
|
1.0
|
NE2
|
E:HIS230
|
4.2
|
20.9
|
1.0
|
CG
|
E:HIS55
|
4.2
|
18.2
|
1.0
|
CG
|
E:HIS57
|
4.2
|
17.4
|
1.0
|
ND1
|
E:HIS55
|
4.2
|
20.2
|
1.0
|
C3
|
E:MPD2404
|
4.3
|
37.6
|
1.0
|
HZ
|
E:KCX169
|
4.3
|
23.9
|
1.0
|
C2
|
E:MPD2404
|
4.3
|
29.6
|
1.0
|
HA
|
E:ASP292
|
4.4
|
23.0
|
1.0
|
CB
|
E:ASP292
|
4.4
|
19.4
|
1.0
|
HM1
|
E:MPD2404
|
4.4
|
36.1
|
1.0
|
HO2
|
E:MPD2404
|
4.5
|
43.9
|
1.0
|
HM2
|
E:MPD2404
|
4.5
|
36.1
|
1.0
|
HH11
|
E:ARG254
|
4.5
|
30.4
|
0.7
|
HB2
|
E:ASP292
|
4.6
|
23.3
|
1.0
|
O4
|
E:MPD2404
|
4.7
|
38.2
|
1.0
|
HE
|
E:ARG254
|
4.9
|
27.5
|
0.7
|
HD1
|
E:HIS57
|
4.9
|
21.1
|
1.0
|
H32
|
E:MPD2404
|
4.9
|
45.1
|
1.0
|
CA
|
E:ASP292
|
4.9
|
19.2
|
1.0
|
|
Zinc binding site 8 out
of 8 in 6bhk
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Zinc Binding Sites List in 6bhk
Zinc binding site 8 out
of 8 in the Phosphotriesterase Variant R18DELTAL7
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 8 of Phosphotriesterase Variant R18DELTAL7 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Zn2402
b:23.2
occ:1.00
|
OQ1
|
E:KCX169
|
1.9
|
20.9
|
1.0
|
ND1
|
E:HIS201
|
2.0
|
23.1
|
1.0
|
O
|
E:HOH2522
|
2.0
|
22.6
|
1.0
|
NE2
|
E:HIS230
|
2.0
|
20.9
|
1.0
|
CE1
|
E:HIS201
|
2.9
|
22.9
|
1.0
|
CX
|
E:KCX169
|
2.9
|
19.4
|
1.0
|
HB2
|
E:HIS201
|
3.0
|
28.4
|
1.0
|
CD2
|
E:HIS230
|
3.0
|
24.6
|
1.0
|
HE1
|
E:HIS201
|
3.0
|
27.5
|
1.0
|
CE1
|
E:HIS230
|
3.1
|
22.3
|
1.0
|
CG
|
E:HIS201
|
3.1
|
20.2
|
1.0
|
HD2
|
E:HIS230
|
3.2
|
29.5
|
1.0
|
OQ2
|
E:KCX169
|
3.2
|
20.0
|
1.0
|
HE1
|
E:HIS55
|
3.2
|
23.6
|
1.0
|
ZN
|
E:ZN2401
|
3.3
|
19.3
|
1.0
|
HE1
|
E:HIS230
|
3.3
|
26.7
|
1.0
|
HE1
|
E:TRP131
|
3.3
|
29.9
|
1.0
|
CB
|
E:HIS201
|
3.5
|
23.6
|
1.0
|
HH11
|
E:ARG254
|
3.6
|
30.4
|
0.7
|
HO2
|
E:MPD2404
|
3.7
|
43.9
|
1.0
|
O2
|
E:MPD2404
|
3.7
|
36.5
|
1.0
|
CE1
|
E:HIS55
|
3.7
|
19.7
|
1.0
|
NE2
|
E:HIS55
|
3.8
|
18.6
|
1.0
|
NH1
|
E:ARG254
|
3.9
|
25.3
|
0.7
|
NE2
|
E:HIS201
|
4.0
|
25.8
|
1.0
|
HH12
|
E:ARG254
|
4.1
|
30.4
|
0.7
|
OD2
|
E:ASP292
|
4.1
|
21.1
|
1.0
|
CD2
|
E:HIS201
|
4.1
|
25.9
|
1.0
|
ND1
|
E:HIS230
|
4.1
|
23.4
|
1.0
|
NE1
|
E:TRP131
|
4.1
|
24.9
|
1.0
|
NZ
|
E:KCX169
|
4.2
|
19.9
|
1.0
|
CG
|
E:HIS230
|
4.2
|
22.1
|
1.0
|
HB3
|
E:HIS201
|
4.2
|
28.4
|
1.0
|
HE2
|
E:KCX169
|
4.2
|
26.7
|
1.0
|
HM3
|
E:MPD2404
|
4.3
|
36.1
|
1.0
|
HA
|
E:HIS201
|
4.3
|
23.9
|
1.0
|
HE
|
E:ARG254
|
4.4
|
27.5
|
0.7
|
CZ
|
E:ARG254
|
4.4
|
26.9
|
0.7
|
CA
|
E:HIS201
|
4.5
|
19.9
|
1.0
|
CE
|
E:KCX169
|
4.6
|
22.2
|
1.0
|
HE3
|
E:KCX169
|
4.6
|
26.7
|
1.0
|
NE
|
E:ARG254
|
4.6
|
22.9
|
0.7
|
OD1
|
E:ASP292
|
4.6
|
20.1
|
1.0
|
CG
|
E:ASP292
|
4.7
|
19.7
|
1.0
|
HD1
|
E:TRP131
|
4.7
|
25.8
|
1.0
|
HE2
|
E:HIS201
|
4.8
|
31.0
|
1.0
|
HZ
|
E:KCX169
|
4.8
|
23.9
|
1.0
|
CD1
|
E:TRP131
|
4.9
|
21.5
|
1.0
|
CM
|
E:MPD2404
|
4.9
|
30.1
|
1.0
|
C2
|
E:MPD2404
|
4.9
|
29.6
|
1.0
|
HD1
|
E:HIS230
|
4.9
|
28.1
|
1.0
|
HM2
|
E:MPD2404
|
4.9
|
36.1
|
1.0
|
ND1
|
E:HIS55
|
5.0
|
20.2
|
1.0
|
|
Reference:
C.M.Miton,
E.C.Campbell,
C.J.Jackson,
N.Tokuriki.
Phosphotriesterase Variant R18DELTAL7 To Be Published.
Page generated: Mon Oct 28 17:57:07 2024
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