Atomistry » Zinc » PDB 6b3w-6bml » 6b6h
Atomistry »
  Zinc »
    PDB 6b3w-6bml »
      6b6h »

Zinc in PDB 6b6h: The Cryo-Em Structure of A Bacterial Class I Transcription Activation Complex

Enzymatic activity of The Cryo-Em Structure of A Bacterial Class I Transcription Activation Complex

All present enzymatic activity of The Cryo-Em Structure of A Bacterial Class I Transcription Activation Complex:
2.7.7.6;

Other elements in 6b6h:

The structure of The Cryo-Em Structure of A Bacterial Class I Transcription Activation Complex also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the The Cryo-Em Structure of A Bacterial Class I Transcription Activation Complex (pdb code 6b6h). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The Cryo-Em Structure of A Bacterial Class I Transcription Activation Complex, PDB code: 6b6h:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6b6h

Go back to Zinc Binding Sites List in 6b6h
Zinc binding site 1 out of 2 in the The Cryo-Em Structure of A Bacterial Class I Transcription Activation Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Cryo-Em Structure of A Bacterial Class I Transcription Activation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1501

b:20.0
occ:1.00
HB2 D:CYS70 1.9 20.0 1.0
H D:CYS72 2.2 20.0 1.0
SG D:CYS70 2.4 20.0 1.0
SG D:CYS72 2.4 20.0 1.0
CB D:CYS70 2.5 20.0 1.0
SG D:CYS88 2.5 20.0 1.0
SG D:CYS85 2.6 20.0 1.0
H D:LEU71 3.0 20.0 1.0
N D:CYS72 3.0 20.0 1.0
HB3 D:CYS70 3.1 20.0 1.0
HB3 D:CYS85 3.2 20.0 1.0
H D:GLY73 3.2 20.0 1.0
N D:LEU71 3.3 20.0 1.0
CB D:CYS85 3.3 20.0 1.0
CB D:CYS72 3.4 20.0 1.0
HB2 D:CYS85 3.5 20.0 1.0
HB3 D:CYS72 3.5 20.0 1.0
H D:LYS74 3.5 20.0 1.0
CA D:CYS70 3.6 20.0 1.0
CA D:CYS72 3.7 20.0 1.0
C D:CYS70 3.7 20.0 1.0
N D:GLY73 3.9 20.0 1.0
H D:CYS88 3.9 20.0 1.0
HB3 D:CYS88 3.9 20.0 1.0
CB D:CYS88 4.0 20.0 1.0
C D:LEU71 4.0 20.0 1.0
HB2 D:LEU71 4.0 20.0 1.0
HA D:CYS70 4.1 20.0 1.0
HB3 D:LYS87 4.1 20.0 1.0
CA D:LEU71 4.1 20.0 1.0
HB2 D:LYS74 4.1 20.0 1.0
HB3 D:LYS74 4.2 20.0 1.0
C D:CYS72 4.2 20.0 1.0
HB2 D:CYS72 4.3 20.0 1.0
HB D:VAL90 4.3 20.0 1.0
N D:LYS74 4.4 20.0 1.0
HD3 D:LYS87 4.5 20.0 1.0
HA D:CYS72 4.5 20.0 1.0
O D:CYS70 4.6 20.0 1.0
HB2 D:CYS88 4.6 20.0 1.0
CB D:LYS74 4.6 20.0 1.0
N D:CYS88 4.6 20.0 1.0
CB D:LEU71 4.6 20.0 1.0
HZ3 D:LYS74 4.6 20.0 1.0
H D:CYS70 4.7 20.0 1.0
N D:CYS70 4.7 20.0 1.0
CA D:CYS85 4.8 20.0 1.0
CA D:CYS88 4.9 20.0 1.0
HG21 D:VAL90 4.9 20.0 1.0
H D:TYR75 5.0 20.0 1.0
HA D:LEU71 5.0 20.0 1.0

Zinc binding site 2 out of 2 in 6b6h

Go back to Zinc Binding Sites List in 6b6h
Zinc binding site 2 out of 2 in the The Cryo-Em Structure of A Bacterial Class I Transcription Activation Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Cryo-Em Structure of A Bacterial Class I Transcription Activation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1502

b:20.0
occ:1.00
HB2 D:CYS888 1.8 20.0 1.0
SG D:CYS898 2.3 20.0 1.0
SG D:CYS888 2.4 20.0 1.0
SG D:CYS814 2.4 20.0 1.0
CB D:CYS888 2.4 20.0 1.0
HB2 D:CYS898 2.9 20.0 1.0
HG1 D:THR816 3.0 20.0 1.0
H D:CYS895 3.0 20.0 1.0
SG D:CYS895 3.1 20.0 1.0
HA D:CYS888 3.1 20.0 1.0
HB3 D:CYS888 3.1 20.0 1.0
CB D:CYS898 3.2 20.0 1.0
HH22 D:ARG883 3.3 20.0 1.0
CA D:CYS888 3.4 20.0 1.0
HB3 D:CYS814 3.5 20.0 1.0
HB3 D:CYS895 3.5 20.0 1.0
HG D:CYS895 3.6 20.0 1.0
CB D:CYS814 3.6 20.0 1.0
OG1 D:THR816 3.7 20.0 1.0
HB3 D:CYS898 3.7 20.0 1.0
NH2 D:ARG883 3.7 20.0 1.0
N D:CYS895 3.8 20.0 1.0
CB D:CYS895 3.8 20.0 1.0
HH21 D:ARG883 3.9 20.0 1.0
H D:CYS898 4.0 20.0 1.0
H D:CYS814 4.1 20.0 1.0
HB2 D:CYS814 4.1 20.0 1.0
HG21 D:THR816 4.1 20.0 1.0
H D:ASP889 4.1 20.0 1.0
H D:CYS888 4.3 20.0 1.0
HA D:VAL894 4.3 20.0 1.0
N D:CYS888 4.3 20.0 1.0
HB D:VAL894 4.3 20.0 1.0
HH12 D:ARG883 4.3 20.0 1.0
CA D:CYS895 4.3 20.0 1.0
C D:CYS888 4.4 20.0 1.0
CZ D:ARG883 4.4 20.0 1.0
CA D:CYS898 4.5 20.0 1.0
N D:ASP889 4.6 20.0 1.0
O D:SER884 4.6 20.0 1.0
N D:CYS898 4.6 20.0 1.0
NH1 D:ARG883 4.7 20.0 1.0
HB2 D:CYS895 4.7 20.0 1.0
H D:THR890 4.7 20.0 1.0
C D:VAL894 4.7 20.0 1.0
N D:CYS814 4.7 20.0 1.0
HG1 D:THR890 4.8 20.0 1.0
OG1 D:THR890 4.8 20.0 1.0
CG2 D:THR816 4.8 20.0 1.0
CB D:THR816 4.8 20.0 1.0
CA D:CYS814 4.8 20.0 1.0
CA D:VAL894 4.8 20.0 1.0
HB3 D:ARG883 4.9 20.0 1.0
O D:CYS895 4.9 20.0 1.0
HG12 D:VAL894 4.9 20.0 1.0
HA D:CYS898 4.9 20.0 1.0
HG23 D:THR816 5.0 20.0 1.0
CB D:VAL894 5.0 20.0 1.0
C D:CYS895 5.0 20.0 1.0

Reference:

B.Liu, C.Hong, R.K.Huang, Z.Yu, T.A.Steitz. Structural Basis of Bacterial Transcription Activation. Science V. 358 947 2017.
ISSN: ESSN 1095-9203
PubMed: 29146813
DOI: 10.1126/SCIENCE.AAO1923
Page generated: Wed Dec 16 11:31:35 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy