Atomistry » Zinc » PDB 6ago-6av2 » 6aml
Atomistry »
  Zinc »
    PDB 6ago-6av2 »
      6aml »

Zinc in PDB 6aml: Phosphotriesterase Variant S8

Protein crystallography data

The structure of Phosphotriesterase Variant S8, PDB code: 6aml was solved by C.M.Miton, E.C.Campbell, C.J.Jackson, N.Tokuriki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.57 / 1.46
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 85.134, 85.811, 88.658, 90.00, 90.00, 90.00
R / Rfree (%) 15.3 / 17.5

Other elements in 6aml:

The structure of Phosphotriesterase Variant S8 also contains other interesting chemical elements:

Arsenic (As) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Phosphotriesterase Variant S8 (pdb code 6aml). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Phosphotriesterase Variant S8, PDB code: 6aml:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 6aml

Go back to Zinc Binding Sites List in 6aml
Zinc binding site 1 out of 4 in the Phosphotriesterase Variant S8


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Phosphotriesterase Variant S8 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2401

b:22.6
occ:0.88
O2 A:CAC2403 1.9 20.9 0.8
NE2 A:HIS57 2.0 23.4 1.0
NE2 A:HIS55 2.0 21.3 1.0
OQ2 A:KCX169 2.2 25.8 1.0
OD1 A:ASP301 2.5 26.8 1.0
CE1 A:HIS57 2.9 26.0 1.0
CE1 A:HIS55 3.0 22.7 1.0
CD2 A:HIS55 3.0 23.6 1.0
CX A:KCX169 3.1 25.8 1.0
CD2 A:HIS57 3.1 23.1 1.0
AS A:CAC2403 3.2 26.9 0.8
CG A:ASP301 3.4 28.0 1.0
OQ1 A:KCX169 3.5 29.1 1.0
C1 A:CAC2403 3.6 22.4 0.8
OD2 A:ASP301 3.7 26.9 1.0
ZN A:ZN2402 3.9 24.7 0.8
CG2 A:VAL101 4.1 23.6 1.0
ND1 A:HIS57 4.1 23.9 1.0
O1 A:CAC2403 4.1 25.6 0.8
CE1 A:HIS230 4.1 31.1 1.0
ND1 A:HIS55 4.1 24.4 1.0
CG A:HIS55 4.2 24.8 1.0
NZ A:KCX169 4.2 26.1 1.0
CG A:HIS57 4.2 24.0 1.0
NE2 A:HIS230 4.4 25.2 1.0
C2 A:CAC2403 4.6 27.4 0.8
CB A:ASP301 4.8 27.0 1.0

Zinc binding site 2 out of 4 in 6aml

Go back to Zinc Binding Sites List in 6aml
Zinc binding site 2 out of 4 in the Phosphotriesterase Variant S8


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Phosphotriesterase Variant S8 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2402

b:24.7
occ:0.83
OQ1 A:KCX169 1.9 29.1 1.0
O1 A:CAC2403 2.0 25.6 0.8
NE2 A:HIS230 2.0 25.2 1.0
ND1 A:HIS201 2.1 28.3 1.0
CD2 A:HIS230 2.9 29.9 1.0
CX A:KCX169 3.0 25.8 1.0
O2 A:CAC2403 3.0 20.9 0.8
CE1 A:HIS201 3.0 28.9 1.0
AS A:CAC2403 3.0 26.9 0.8
CE1 A:HIS230 3.1 31.1 1.0
CG A:HIS201 3.1 25.2 1.0
OQ2 A:KCX169 3.3 25.8 1.0
CB A:HIS201 3.5 28.6 1.0
NE1 A:TRP131 3.8 26.7 1.0
ZN A:ZN2401 3.9 22.6 0.9
CG A:HIS230 4.1 32.5 1.0
NE2 A:HIS201 4.1 29.5 1.0
ND1 A:HIS230 4.1 32.1 1.0
NZ A:KCX169 4.2 26.1 1.0
CD2 A:HIS201 4.2 27.5 1.0
CE1 A:HIS55 4.3 22.7 1.0
CA A:HIS201 4.3 27.8 1.0
C2 A:CAC2403 4.3 27.4 0.8
CD1 A:TRP131 4.4 27.4 1.0
C1 A:CAC2403 4.4 22.4 0.8
NE2 A:HIS55 4.5 21.3 1.0
CE A:KCX169 4.6 26.0 1.0
OD2 A:ASP301 5.0 26.9 1.0

Zinc binding site 3 out of 4 in 6aml

Go back to Zinc Binding Sites List in 6aml
Zinc binding site 3 out of 4 in the Phosphotriesterase Variant S8


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Phosphotriesterase Variant S8 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn2401

b:17.8
occ:1.00
O2 G:CAC2403 1.9 14.2 0.8
NE2 G:HIS55 2.0 15.6 1.0
NE2 G:HIS57 2.1 16.0 0.9
OQ1 G:KCX169 2.1 17.3 1.0
OD1 G:ASP301 2.5 17.4 1.0
CE1 G:HIS57 3.0 15.3 0.9
CD2 G:HIS55 3.0 15.0 1.0
CX G:KCX169 3.0 20.0 1.0
CE1 G:HIS55 3.1 17.7 1.0
CD2 G:HIS57 3.1 16.0 0.9
AS G:CAC2403 3.3 19.3 0.8
CG G:ASP301 3.4 16.1 1.0
OQ2 G:KCX169 3.5 17.7 1.0
C1 G:CAC2403 3.6 19.8 0.8
OD2 G:ASP301 3.6 18.5 1.0
ZN G:ZN2402 4.0 18.4 0.8
CG2 G:VAL101 4.0 16.3 1.0
NZ G:KCX169 4.0 18.9 1.0
O1 G:CAC2403 4.1 16.9 0.8
ND1 G:HIS57 4.1 15.5 0.9
CE1 G:HIS230 4.1 22.0 1.0
ND1 G:HIS55 4.2 17.2 1.0
CG G:HIS55 4.2 15.4 1.0
CG G:HIS57 4.2 14.4 0.9
NE2 G:HIS230 4.4 21.7 1.0
CB G:ASP301 4.7 16.7 1.0
C2 G:CAC2403 4.8 20.4 0.8

Zinc binding site 4 out of 4 in 6aml

Go back to Zinc Binding Sites List in 6aml
Zinc binding site 4 out of 4 in the Phosphotriesterase Variant S8


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Phosphotriesterase Variant S8 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn2402

b:18.4
occ:0.83
OQ2 G:KCX169 1.9 17.7 1.0
O1 G:CAC2403 1.9 16.9 0.8
NE2 G:HIS230 2.0 21.7 1.0
ND1 G:HIS201 2.1 20.4 1.0
CX G:KCX169 2.9 20.0 1.0
CD2 G:HIS230 3.0 20.0 1.0
CE1 G:HIS201 3.0 20.9 1.0
O2 G:CAC2403 3.1 14.2 0.8
AS G:CAC2403 3.1 19.3 0.8
CE1 G:HIS230 3.1 22.0 1.0
CG G:HIS201 3.1 19.4 1.0
OQ1 G:KCX169 3.4 17.3 1.0
CB G:HIS201 3.5 21.6 1.0
NE1 G:TRP131 3.9 20.9 1.0
ZN G:ZN2401 4.0 17.8 1.0
NE2 G:HIS201 4.1 22.4 1.0
NZ G:KCX169 4.1 18.9 1.0
CG G:HIS230 4.2 20.5 1.0
ND1 G:HIS230 4.2 20.9 1.0
CD2 G:HIS201 4.2 21.9 1.0
CE1 G:HIS55 4.3 17.7 1.0
CA G:HIS201 4.3 21.9 1.0
C2 G:CAC2403 4.4 20.4 0.8
CD1 G:TRP131 4.4 20.9 1.0
NE2 G:HIS55 4.5 15.6 1.0
C1 G:CAC2403 4.5 19.8 0.8
CE G:KCX169 4.6 18.7 1.0
OD2 G:ASP301 5.0 18.5 1.0

Reference:

C.M.Miton, E.C.Campbell, C.J.Jackson, N.Tokuriki. Phosphotriesterase Variant S8 To Be Published.
Page generated: Mon Oct 28 17:37:45 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy