Zinc in PDB 6a12: X-Ray Structure of Lipase From Geobacillus Thermoleovorans

All present enzymatic activity of X-Ray Structure of Lipase From Geobacillus Thermoleovorans:
3.1.1.3;

The structure of X-Ray Structure of Lipase From Geobacillus Thermoleovorans, PDB code: 6a12 was solved by T.R.Moharana, B.Pal, N.M.Rao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.03 / 2.15
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	49.140, 72.291, 112.405, 90.00, 90.00, 90.00
R / Rfree (%)	17.3 / 22.1

The structure of X-Ray Structure of Lipase From Geobacillus Thermoleovorans also contains other interesting chemical elements:

Calcium

(Ca)

1 atom

The binding sites of Zinc atom in the X-Ray Structure of Lipase From Geobacillus Thermoleovorans (pdb code 6a12). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the X-Ray Structure of Lipase From Geobacillus Thermoleovorans, PDB code: 6a12:

Zinc binding site 1 out of 1 in the X-Ray Structure of Lipase From Geobacillus Thermoleovorans


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of X-Ray Structure of Lipase From Geobacillus Thermoleovorans within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn402 b:20.4 occ:1.00 OD2 A:ASP238 2.1 12.4 1.0 NE2 A:HIS81 2.1 14.5 1.0 OD1 A:ASP61 2.2 14.5 1.0 NE2 A:HIS87 2.3 16.6 1.0 OD2 A:ASP61 2.6 15.8 1.0 CG A:ASP61 2.7 14.4 1.0 CG A:ASP238 2.7 16.2 1.0 OD1 A:ASP238 2.8 17.1 1.0 CD2 A:HIS81 3.0 15.8 1.0 CD2 A:HIS87 3.1 12.3 1.0 CE1 A:HIS81 3.2 16.2 1.0 CE1 A:HIS87 3.4 14.4 1.0 OG A:SER58 3.8 13.7 1.0 CG A:HIS81 4.2 14.6 1.0 CB A:ASP238 4.2 11.5 1.0 CB A:ASP61 4.2 11.7 1.0 ND1 A:HIS81 4.2 17.2 1.0 CG A:HIS87 4.3 15.6 1.0 ND1 A:HIS87 4.4 16.0 1.0 CD1 A:TRP60 4.5 12.0 1.0 CD2 A:HIS85 4.7 15.0 1.0 O A:ASP238 4.8 14.9 1.0 N A:ASP61 4.9 10.2 1.0 CA A:ASP61 4.9 12.5 1.0 CB A:SER58 4.9 12.1 1.0 CB A:HIS85 4.9 14.0 1.0 CG A:HIS85 5.0 15.0 1.0

T.R.Moharana, B.Pal, N.M.Rao. X-Ray Structure and Characterization of A Thermostable Lipase From Geobacillus Thermoleovorans. Biochem. Biophys. Res. V. 508 145 2019COMMUN..
ISSN: ESSN 1090-2104
PubMed: 30471860
DOI: 10.1016/J.BBRC.2018.11.105