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Zinc in PDB 5zmy: Crystal Structure of A Cis-Epoxysuccinate Hydrolase Producing D(-)- Tartaric Acids

Protein crystallography data

The structure of Crystal Structure of A Cis-Epoxysuccinate Hydrolase Producing D(-)- Tartaric Acids, PDB code: 5zmy was solved by S.Dong, X.Liu, X.Wang, Y.Feng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.11 / 1.87
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 135.159, 158.348, 134.090, 90.00, 90.00, 90.00
R / Rfree (%) 16.8 / 19.5

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A Cis-Epoxysuccinate Hydrolase Producing D(-)- Tartaric Acids (pdb code 5zmy). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 8 binding sites of Zinc where determined in the Crystal Structure of A Cis-Epoxysuccinate Hydrolase Producing D(-)- Tartaric Acids, PDB code: 5zmy:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Zinc binding site 1 out of 8 in 5zmy

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Zinc binding site 1 out of 8 in the Crystal Structure of A Cis-Epoxysuccinate Hydrolase Producing D(-)- Tartaric Acids


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Cis-Epoxysuccinate Hydrolase Producing D(-)- Tartaric Acids within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn400

b:15.7
occ:0.45
O2 A:TAR401 2.1 18.4 1.0
NE2 A:HIS69 2.1 22.6 1.0
NE2 A:HIS67 2.1 17.9 1.0
OE2 A:GLU34 2.1 20.4 1.0
O1 A:TAR401 2.2 18.3 1.0
O3 A:TAR401 2.2 20.4 1.0
HO2 A:TAR401 2.4 22.1 1.0
C2 A:TAR401 2.7 20.3 1.0
C1 A:TAR401 2.8 19.9 1.0
CD A:GLU34 2.8 18.6 1.0
HO3 A:TAR401 2.8 24.5 1.0
OE1 A:GLU34 2.9 19.9 1.0
CE1 A:HIS69 3.0 23.4 1.0
C3 A:TAR401 3.0 21.5 1.0
CE1 A:HIS67 3.1 17.3 1.0
HE1 A:HIS69 3.1 28.2 1.0
CD2 A:HIS67 3.1 15.4 1.0
CD2 A:HIS69 3.2 20.8 1.0
HE1 A:HIS67 3.2 20.8 1.0
HD2 A:HIS67 3.3 18.6 1.0
HD2 A:HIS69 3.4 25.0 1.0
H2 A:TAR401 3.6 24.4 1.0
HH12 A:ARG31 3.6 18.1 1.0
H3 A:TAR401 3.8 25.9 1.0
HB A:THR102 3.8 28.1 1.0
HG1 A:THR102 3.8 28.8 1.0
C4 A:TAR401 3.9 23.4 1.0
O4 A:TAR401 4.0 23.8 1.0
O A:HOH536 4.0 23.7 1.0
O11 A:TAR401 4.0 19.9 1.0
HH22 A:ARG31 4.1 18.5 1.0
ND1 A:HIS69 4.2 23.3 1.0
ND1 A:HIS67 4.2 15.8 1.0
NH1 A:ARG31 4.2 15.0 1.0
OG1 A:THR102 4.2 24.0 1.0
CG A:HIS67 4.3 14.3 1.0
CG A:HIS69 4.3 20.3 1.0
HA A:GLU34 4.3 18.5 1.0
CG A:GLU34 4.3 16.9 1.0
HZ2 A:LYS247 4.4 26.1 1.0
CB A:THR102 4.5 23.3 1.0
HG2 A:GLU34 4.5 20.4 1.0
NH2 A:ARG31 4.6 15.3 1.0
O A:HOH671 4.6 16.0 1.0
HH11 A:ARG31 4.6 18.1 1.0
CZ A:ARG31 4.7 14.7 1.0
HG3 A:GLU34 4.8 20.4 1.0
HA A:THR102 4.9 26.4 1.0
HD1 A:HIS69 4.9 28.0 1.0
HG3 A:PRO133 4.9 18.3 1.0
HD1 A:HIS67 5.0 19.1 1.0
HB3 A:GLU34 5.0 20.7 1.0

Zinc binding site 2 out of 8 in 5zmy

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Zinc binding site 2 out of 8 in the Crystal Structure of A Cis-Epoxysuccinate Hydrolase Producing D(-)- Tartaric Acids


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Cis-Epoxysuccinate Hydrolase Producing D(-)- Tartaric Acids within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn400

b:15.0
occ:0.41
NE2 B:HIS67 2.1 19.4 1.0
OE2 B:GLU34 2.1 18.8 1.0
NE2 B:HIS69 2.1 21.7 1.0
O2 B:TAR401 2.1 18.3 1.0
O11 B:TAR401 2.2 20.6 1.0
O3 B:TAR401 2.2 20.4 1.0
HO2 B:TAR401 2.5 22.1 1.0
C2 B:TAR401 2.8 21.0 1.0
C1 B:TAR401 2.9 22.3 1.0
CD B:GLU34 2.9 17.0 1.0
HO3 B:TAR401 2.9 24.6 1.0
CE1 B:HIS69 2.9 22.8 1.0
C3 B:TAR401 3.0 22.3 1.0
CD2 B:HIS67 3.0 17.1 1.0
HE1 B:HIS69 3.0 27.4 1.0
OE1 B:GLU34 3.0 17.3 1.0
CE1 B:HIS67 3.1 18.8 1.0
HD2 B:HIS67 3.2 20.6 1.0
CD2 B:HIS69 3.2 20.9 1.0
HE1 B:HIS67 3.3 22.6 1.0
HD2 B:HIS69 3.4 25.2 1.0
HH12 B:ARG31 3.6 20.4 1.0
H2 B:TAR401 3.7 25.2 1.0
H3 B:TAR401 3.8 26.9 1.0
HG1 B:THR102 3.8 28.6 1.0
HB B:THR102 3.8 26.9 1.0
C4 B:TAR401 3.9 23.9 1.0
O41 B:TAR401 4.1 24.2 1.0
HH22 B:ARG31 4.1 20.9 1.0
O B:HOH570 4.1 24.5 1.0
ND1 B:HIS69 4.1 23.2 1.0
O1 B:TAR401 4.1 23.8 1.0
CG B:HIS67 4.2 15.9 1.0
NH1 B:ARG31 4.2 16.9 1.0
ND1 B:HIS67 4.2 18.3 1.0
HA B:GLU34 4.2 17.7 1.0
OG1 B:THR102 4.3 23.8 1.0
CG B:HIS69 4.3 21.2 1.0
CG B:GLU34 4.3 15.2 1.0
HG2 B:GLU34 4.5 18.3 1.0
CB B:THR102 4.5 22.3 1.0
HZ2 B:LYS247 4.6 27.9 1.0
NH2 B:ARG31 4.6 17.4 1.0
O B:HOH677 4.6 13.3 1.0
HH11 B:ARG31 4.7 20.4 1.0
CZ B:ARG31 4.8 16.4 1.0
HG3 B:PRO133 4.8 18.2 1.0
HD1 B:HIS69 4.9 27.9 1.0
HG3 B:GLU34 4.9 18.3 1.0
HA B:THR102 4.9 25.9 1.0
HB3 B:GLU34 5.0 19.4 1.0
O4 B:TAR401 5.0 24.0 1.0
HD1 B:HIS67 5.0 22.0 1.0

Zinc binding site 3 out of 8 in 5zmy

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Zinc binding site 3 out of 8 in the Crystal Structure of A Cis-Epoxysuccinate Hydrolase Producing D(-)- Tartaric Acids


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of A Cis-Epoxysuccinate Hydrolase Producing D(-)- Tartaric Acids within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn400

b:14.0
occ:0.41
NE2 C:HIS67 2.0 22.4 1.0
O2 C:TAR401 2.0 20.4 1.0
NE2 C:HIS69 2.1 24.6 1.0
OE2 C:GLU34 2.2 21.7 1.0
O11 C:TAR401 2.2 20.6 1.0
HO2 C:TAR401 2.3 24.5 1.0
O3 C:TAR401 2.4 26.6 1.0
C2 C:TAR401 2.7 23.5 1.0
C1 C:TAR401 2.7 23.6 1.0
CD C:GLU34 2.9 19.7 1.0
CE1 C:HIS69 3.0 24.7 1.0
OE1 C:GLU34 3.0 21.2 1.0
CD2 C:HIS67 3.0 19.5 1.0
HO3 C:TAR401 3.1 32.0 1.0
HE1 C:HIS69 3.1 29.7 1.0
C3 C:TAR401 3.1 26.9 1.0
CE1 C:HIS67 3.1 20.5 1.0
HD2 C:HIS67 3.1 23.5 1.0
CD2 C:HIS69 3.1 22.6 1.0
HE1 C:HIS67 3.3 24.7 1.0
HD2 C:HIS69 3.4 27.2 1.0
HH12 C:ARG31 3.6 23.0 1.0
H2 C:TAR401 3.6 28.3 1.0
HB C:THR102 3.7 26.5 1.0
HG1 C:THR102 3.7 27.3 1.0
H3 C:TAR401 3.8 32.3 1.0
C4 C:TAR401 4.0 29.6 1.0
O1 C:TAR401 4.0 24.6 1.0
O C:HOH615 4.0 28.6 1.0
HH22 C:ARG31 4.1 19.8 1.0
ND1 C:HIS69 4.1 24.7 1.0
HA C:GLU34 4.1 19.1 1.0
NH1 C:ARG31 4.1 19.1 1.0
CG C:HIS67 4.1 18.0 1.0
O41 C:TAR401 4.2 29.9 1.0
ND1 C:HIS67 4.2 19.6 1.0
OG1 C:THR102 4.2 22.7 1.0
CG C:HIS69 4.2 21.9 1.0
CG C:GLU34 4.3 17.1 1.0
CB C:THR102 4.4 22.0 1.0
O C:HOH667 4.4 15.0 1.0
HZ2 C:LYS247 4.5 31.3 1.0
HG2 C:GLU34 4.5 20.6 1.0
HH11 C:ARG31 4.6 23.0 1.0
NH2 C:ARG31 4.6 16.4 1.0
CZ C:ARG31 4.7 16.7 1.0
HA C:THR102 4.9 25.0 1.0
HD1 C:HIS69 4.9 29.8 1.0
O4 C:TAR401 4.9 30.7 1.0
HG3 C:PRO133 4.9 21.0 1.0
HG3 C:GLU34 4.9 20.6 1.0
HD1 C:HIS67 5.0 23.6 1.0

Zinc binding site 4 out of 8 in 5zmy

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Zinc binding site 4 out of 8 in the Crystal Structure of A Cis-Epoxysuccinate Hydrolase Producing D(-)- Tartaric Acids


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of A Cis-Epoxysuccinate Hydrolase Producing D(-)- Tartaric Acids within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn400

b:17.9
occ:0.41
O2 D:TAR401 2.0 24.4 1.0
NE2 D:HIS69 2.0 27.2 1.0
OE2 D:GLU34 2.1 23.2 1.0
NE2 D:HIS67 2.1 20.3 1.0
O3 D:TAR401 2.2 29.1 1.0
O1 D:TAR401 2.3 32.0 1.0
HO2 D:TAR401 2.5 29.4 1.0
C2 D:TAR401 2.7 29.0 1.0
C1 D:TAR401 2.8 31.5 1.0
CD D:GLU34 2.8 20.8 1.0
HO3 D:TAR401 2.8 35.0 1.0
OE1 D:GLU34 2.8 21.4 1.0
CE1 D:HIS69 3.0 27.8 1.0
C3 D:TAR401 3.0 30.8 1.0
HE1 D:HIS69 3.1 33.5 1.0
CD2 D:HIS69 3.1 25.5 1.0
CD2 D:HIS67 3.1 17.0 1.0
CE1 D:HIS67 3.1 19.1 1.0
HD2 D:HIS67 3.3 20.5 1.0
HE1 D:HIS67 3.3 23.1 1.0
HD2 D:HIS69 3.3 30.7 1.0
HB D:THR102 3.5 29.8 1.0
H2 D:TAR401 3.6 34.9 1.0
H3 D:TAR401 3.7 37.1 1.0
HG1 D:THR102 3.9 32.0 1.0
HH12 D:ARG31 3.9 19.1 1.0
C4 D:TAR401 3.9 34.1 1.0
O11 D:TAR401 4.0 32.6 1.0
ND1 D:HIS69 4.1 27.4 1.0
O4 D:TAR401 4.1 35.5 1.0
O D:HOH632 4.2 33.2 1.0
OG1 D:THR102 4.2 26.6 1.0
HA D:GLU34 4.2 18.9 1.0
CG D:HIS69 4.2 23.8 1.0
HH22 D:ARG31 4.2 20.3 1.0
CB D:THR102 4.2 24.8 1.0
ND1 D:HIS67 4.2 17.7 1.0
CG D:HIS67 4.3 16.6 1.0
HZ2 D:LYS247 4.3 34.0 1.0
CG D:GLU34 4.3 17.8 1.0
NH1 D:ARG31 4.4 15.9 1.0
HG2 D:GLU34 4.5 21.5 1.0
O D:HOH692 4.6 18.1 1.0
NH2 D:ARG31 4.7 16.8 1.0
HA D:THR102 4.8 28.0 1.0
HH11 D:ARG31 4.8 19.1 1.0
CZ D:ARG31 4.8 15.5 1.0
HG3 D:GLU34 4.9 21.5 1.0
HD1 D:HIS69 4.9 33.0 1.0
HB3 D:GLU34 4.9 20.1 1.0
O41 D:TAR401 4.9 35.9 1.0
HG3 D:PRO133 5.0 21.2 1.0

Zinc binding site 5 out of 8 in 5zmy

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Zinc binding site 5 out of 8 in the Crystal Structure of A Cis-Epoxysuccinate Hydrolase Producing D(-)- Tartaric Acids


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of A Cis-Epoxysuccinate Hydrolase Producing D(-)- Tartaric Acids within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn400

b:21.3
occ:0.21
O1 E:TAR401 2.0 29.0 1.0
O2 E:TAR401 2.0 28.9 1.0
OE2 E:GLU34 2.1 49.9 1.0
NE2 E:HIS67 2.1 43.1 1.0
NE2 E:HIS69 2.1 46.5 1.0
O3 E:TAR401 2.4 29.1 1.0
C1 E:TAR401 2.6 29.2 1.0
C2 E:TAR401 2.6 29.4 1.0
HO2 E:TAR401 2.7 34.8 1.0
CD E:GLU34 2.9 48.9 1.0
C3 E:TAR401 3.0 31.3 1.0
OE1 E:GLU34 3.0 53.2 1.0
CE1 E:HIS69 3.0 46.6 1.0
CE1 E:HIS67 3.0 41.2 1.0
CD2 E:HIS67 3.1 39.6 1.0
HO3 E:TAR401 3.1 35.0 1.0
HE1 E:HIS69 3.2 56.0 1.0
CD2 E:HIS69 3.2 45.2 1.0
HE1 E:HIS67 3.2 49.5 1.0
HD2 E:HIS67 3.3 47.6 1.0
HD2 E:HIS69 3.4 54.4 1.0
HG1 E:THR102 3.5 44.2 1.0
H2 E:TAR401 3.5 35.4 1.0
HB E:THR102 3.6 44.9 1.0
H3 E:TAR401 3.7 37.6 1.0
HH12 E:ARG31 3.8 32.5 1.0
O11 E:TAR401 3.9 29.6 1.0
C4 E:TAR401 3.9 36.1 1.0
OG1 E:THR102 4.0 36.8 1.0
O E:HOH580 4.0 38.4 1.0
ND1 E:HIS67 4.2 39.4 1.0
ND1 E:HIS69 4.2 47.0 1.0
CG E:HIS67 4.2 36.5 1.0
CG E:HIS69 4.3 46.0 1.0
CB E:THR102 4.3 37.3 1.0
NH1 E:ARG31 4.3 27.5 1.0
HA E:GLU34 4.3 45.2 1.0
CG E:GLU34 4.3 44.5 1.0
O41 E:TAR401 4.4 38.3 1.0
HH22 E:ARG31 4.4 36.4 1.0
HG2 E:GLU34 4.5 53.4 1.0
O4 E:TAR401 4.6 38.6 1.0
HH11 E:ARG31 4.6 32.5 1.0
HZ2 E:LYS247 4.7 41.4 1.0
O E:HOH589 4.7 24.3 1.0
HA E:THR102 4.8 44.8 1.0
NH2 E:ARG31 4.9 30.2 1.0
HG3 E:GLU34 4.9 53.4 1.0
CZ E:ARG31 4.9 29.1 1.0
HD1 E:HIS67 4.9 47.3 1.0
HG3 E:PRO133 4.9 34.2 1.0
HD1 E:HIS69 5.0 56.4 1.0

Zinc binding site 6 out of 8 in 5zmy

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Zinc binding site 6 out of 8 in the Crystal Structure of A Cis-Epoxysuccinate Hydrolase Producing D(-)- Tartaric Acids


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of A Cis-Epoxysuccinate Hydrolase Producing D(-)- Tartaric Acids within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn400

b:17.0
occ:0.40
O2 F:TAR401 1.8 22.1 1.0
NE2 F:HIS69 2.0 31.5 1.0
O11 F:TAR401 2.1 23.5 1.0
OE2 F:GLU34 2.1 27.0 1.0
NE2 F:HIS67 2.1 27.1 1.0
O3 F:TAR401 2.2 26.4 1.0
HO2 F:TAR401 2.4 26.6 1.0
C2 F:TAR401 2.5 25.1 1.0
C1 F:TAR401 2.6 24.6 1.0
CD F:GLU34 2.9 24.6 1.0
C3 F:TAR401 2.9 27.4 1.0
HO3 F:TAR401 2.9 31.8 1.0
CE1 F:HIS69 2.9 31.9 1.0
OE1 F:GLU34 3.0 26.6 1.0
HE1 F:HIS69 3.0 38.4 1.0
CD2 F:HIS67 3.1 23.4 1.0
CE1 F:HIS67 3.1 26.4 1.0
CD2 F:HIS69 3.1 29.4 1.0
HD2 F:HIS67 3.2 28.2 1.0
HE1 F:HIS67 3.3 31.8 1.0
HD2 F:HIS69 3.4 35.3 1.0
H2 F:TAR401 3.4 30.2 1.0
HB F:THR102 3.6 31.2 1.0
H3 F:TAR401 3.6 33.0 1.0
HH12 F:ARG31 3.7 23.0 1.0
C4 F:TAR401 3.9 30.9 1.0
O1 F:TAR401 3.9 25.5 1.0
HG1 F:THR102 4.0 30.8 1.0
ND1 F:HIS69 4.1 31.9 1.0
HH22 F:ARG31 4.1 24.8 1.0
O41 F:TAR401 4.1 32.2 1.0
NH1 F:ARG31 4.2 19.1 1.0
ND1 F:HIS67 4.2 24.1 1.0
O F:HOH640 4.2 32.4 1.0
CG F:HIS69 4.2 28.3 1.0
HA F:GLU34 4.2 25.0 1.0
CG F:HIS67 4.2 21.9 1.0
OG1 F:THR102 4.3 25.6 1.0
CG F:GLU34 4.3 21.8 1.0
CB F:THR102 4.3 25.9 1.0
HZ2 F:LYS247 4.5 30.5 1.0
HG2 F:GLU34 4.5 26.3 1.0
NH2 F:ARG31 4.6 20.6 1.0
HH11 F:ARG31 4.6 23.0 1.0
O F:HOH613 4.6 15.8 1.0
CZ F:ARG31 4.7 19.9 1.0
HD1 F:HIS69 4.8 38.4 1.0
HG3 F:GLU34 4.9 26.3 1.0
O4 F:TAR401 4.9 31.6 1.0
HA F:THR102 5.0 30.9 1.0

Zinc binding site 7 out of 8 in 5zmy

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Zinc binding site 7 out of 8 in the Crystal Structure of A Cis-Epoxysuccinate Hydrolase Producing D(-)- Tartaric Acids


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Crystal Structure of A Cis-Epoxysuccinate Hydrolase Producing D(-)- Tartaric Acids within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn400

b:13.5
occ:0.40
NE2 G:HIS67 2.0 19.9 1.0
O2 G:TAR401 2.1 20.5 1.0
OE2 G:GLU34 2.1 21.4 1.0
NE2 G:HIS69 2.1 23.7 1.0
O11 G:TAR401 2.2 25.9 1.0
O3 G:TAR401 2.2 26.7 1.0
HO2 G:TAR401 2.4 24.7 1.0
C2 G:TAR401 2.7 24.4 1.0
CD G:GLU34 2.8 19.2 1.0
C1 G:TAR401 2.8 26.0 1.0
OE1 G:GLU34 2.8 19.4 1.0
HO3 G:TAR401 2.9 32.2 1.0
CE1 G:HIS69 3.0 24.0 1.0
C3 G:TAR401 3.0 27.0 1.0
CE1 G:HIS67 3.0 18.8 1.0
CD2 G:HIS67 3.1 17.8 1.0
HE1 G:HIS69 3.1 28.9 1.0
HE1 G:HIS67 3.2 22.6 1.0
CD2 G:HIS69 3.2 22.8 1.0
HD2 G:HIS67 3.3 21.5 1.0
HD2 G:HIS69 3.4 27.4 1.0
H2 G:TAR401 3.6 29.4 1.0
HB G:THR102 3.6 28.1 1.0
H3 G:TAR401 3.7 32.5 1.0
HH12 G:ARG31 3.7 22.9 1.0
C4 G:TAR401 3.9 29.2 1.0
HG1 G:THR102 3.9 29.8 1.0
O1 G:TAR401 4.0 26.6 1.0
O G:HOH655 4.1 27.9 1.0
O41 G:TAR401 4.1 29.7 1.0
HH22 G:ARG31 4.1 21.6 1.0
ND1 G:HIS69 4.1 24.0 1.0
ND1 G:HIS67 4.1 17.9 1.0
HA G:GLU34 4.2 20.3 1.0
CG G:HIS67 4.2 17.2 1.0
NH1 G:ARG31 4.2 19.0 1.0
CG G:GLU34 4.2 17.5 1.0
OG1 G:THR102 4.3 24.8 1.0
CG G:HIS69 4.3 22.6 1.0
CB G:THR102 4.4 23.4 1.0
HG2 G:GLU34 4.5 21.1 1.0
HZ2 G:LYS247 4.5 27.3 1.0
NH2 G:ARG31 4.6 17.9 1.0
O G:HOH613 4.6 18.7 1.0
HH11 G:ARG31 4.6 22.9 1.0
CZ G:ARG31 4.7 18.4 1.0
O4 G:TAR401 4.8 30.1 1.0
HG3 G:GLU34 4.8 21.1 1.0
HA G:THR102 4.8 26.1 1.0
HD1 G:HIS69 4.9 28.9 1.0
HG3 G:PRO133 4.9 21.7 1.0
HD1 G:HIS67 4.9 21.5 1.0
HB3 G:GLU34 4.9 21.7 1.0

Zinc binding site 8 out of 8 in 5zmy

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Zinc binding site 8 out of 8 in the Crystal Structure of A Cis-Epoxysuccinate Hydrolase Producing D(-)- Tartaric Acids


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Crystal Structure of A Cis-Epoxysuccinate Hydrolase Producing D(-)- Tartaric Acids within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Zn400

b:14.0
occ:0.33
O2 H:TAR401 2.1 23.5 1.0
NE2 H:HIS69 2.1 27.5 1.0
NE2 H:HIS67 2.1 24.2 1.0
OE2 H:GLU34 2.1 23.9 1.0
O3 H:TAR401 2.2 30.6 1.0
O1 H:TAR401 2.3 29.5 1.0
HO2 H:TAR401 2.6 28.3 1.0
C2 H:TAR401 2.7 28.2 1.0
CD H:GLU34 2.8 21.9 1.0
OE1 H:GLU34 2.8 21.9 1.0
C1 H:TAR401 2.8 29.4 1.0
HO3 H:TAR401 2.9 36.8 1.0
CE1 H:HIS69 2.9 28.1 1.0
C3 H:TAR401 3.0 30.9 1.0
HE1 H:HIS69 3.0 33.8 1.0
CD2 H:HIS67 3.0 22.4 1.0
HD2 H:HIS67 3.2 26.9 1.0
CE1 H:HIS67 3.2 23.9 1.0
CD2 H:HIS69 3.2 26.5 1.0
HE1 H:HIS67 3.4 28.8 1.0
HD2 H:HIS69 3.4 31.9 1.0
H2 H:TAR401 3.6 34.0 1.0
HB H:THR102 3.6 32.1 1.0
HH12 H:ARG31 3.7 22.9 1.0
H3 H:TAR401 3.8 37.1 1.0
C4 H:TAR401 3.9 32.5 1.0
HG1 H:THR102 3.9 34.4 1.0
O4 H:TAR401 4.0 32.5 1.0
O11 H:TAR401 4.0 30.6 1.0
O H:HOH627 4.1 33.6 1.0
ND1 H:HIS69 4.1 28.0 1.0
HH22 H:ARG31 4.2 22.0 1.0
NH1 H:ARG31 4.2 19.0 1.0
CG H:HIS67 4.2 21.5 1.0
HA H:GLU34 4.2 23.6 1.0
ND1 H:HIS67 4.3 23.0 1.0
CG H:HIS69 4.3 26.0 1.0
CG H:GLU34 4.3 19.9 1.0
OG1 H:THR102 4.3 28.6 1.0
HZ2 H:LYS247 4.4 32.7 1.0
CB H:THR102 4.4 26.7 1.0
HG2 H:GLU34 4.5 24.0 1.0
O H:HOH732 4.5 17.7 1.0
HH11 H:ARG31 4.6 22.9 1.0
NH2 H:ARG31 4.6 18.3 1.0
CZ H:ARG31 4.7 17.7 1.0
HG3 H:GLU34 4.8 24.0 1.0
HB3 H:GLU34 4.8 24.2 1.0
HD1 H:HIS69 4.9 33.7 1.0
O41 H:TAR401 4.9 32.2 1.0
HA H:THR102 5.0 31.5 1.0
CB H:GLU34 5.0 20.1 1.0

Reference:

S.Dong, X.Liu, G.Z.Cui, Q.Cui, X.Wang, Y.Feng. Structural Insight Into the Catalytic Mechanism of A Cis-Epoxysuccinate Hydrolase Producing Enantiomerically Pure D(-)-Tartaric Acid. Chem. Commun. (Camb.) V. 54 8482 2018.
ISSN: ESSN 1364-548X
PubMed: 30003205
DOI: 10.1039/C8CC04398A
Page generated: Wed Dec 16 11:27:17 2020

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