Zinc in PDB 5zmp: The Structure of A Lysine Deacylase

The structure of The Structure of A Lysine Deacylase, PDB code: 5zmp was solved by F.Ge, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.19
Space group	P 41
Cell size a, b, c (Å), α, β, γ (°)	56.790, 56.790, 112.520, 90.00, 90.00, 90.00
R / Rfree (%)	17.3 / 21.5

The binding sites of Zinc atom in the The Structure of A Lysine Deacylase (pdb code 5zmp). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Structure of A Lysine Deacylase, PDB code: 5zmp:

Zinc binding site 1 out of 1 in the The Structure of A Lysine Deacylase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structure of A Lysine Deacylase within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1001 b:54.1 occ:1.00 OD1 A:ASP164 1.9 30.7 1.0 OD2 A:ASP248 2.0 26.8 1.0 ND1 A:HIS166 2.4 22.6 1.0 O A:HOH1274 2.6 23.8 1.0 CG A:ASP164 2.8 21.1 1.0 OD2 A:ASP164 2.9 22.9 1.0 CG A:ASP248 3.1 23.2 1.0 CE1 A:HIS166 3.2 18.3 1.0 CG A:HIS166 3.4 19.1 1.0 OD1 A:ASP248 3.5 23.1 1.0 O A:HOH1276 3.7 27.2 1.0 CB A:HIS166 3.8 19.5 1.0 NE2 A:HIS126 4.0 21.9 1.0 CB A:ASP164 4.2 20.1 1.0 N A:HIS166 4.2 22.6 1.0 CG1 A:VAL165 4.2 18.9 1.0 CA A:GLY285 4.2 20.1 1.0 OH A:TYR287 4.3 23.9 1.0 CE1 A:HIS126 4.4 22.7 1.0 NE2 A:HIS166 4.4 22.4 1.0 CB A:ASP248 4.4 19.0 1.0 N A:VAL165 4.5 18.6 1.0 CE2 A:TYR287 4.5 21.9 1.0 CD2 A:HIS166 4.5 20.5 1.0 N A:GLY285 4.6 20.2 1.0 NE2 A:HIS127 4.6 18.7 1.0 CA A:HIS166 4.6 19.4 1.0 CZ A:TYR287 4.9 20.7 1.0 CA A:ASP164 5.0 21.8 1.0

F.Ge, F.Ge. N/A N/A.