Zinc in PDB 5zj1: Crystal Structure of Ndm-1 in Complex with D-Captopril Derivative Cyt- 14

All present enzymatic activity of Crystal Structure of Ndm-1 in Complex with D-Captopril Derivative Cyt- 14:
3.5.2.6;

The structure of Crystal Structure of Ndm-1 in Complex with D-Captopril Derivative Cyt- 14, PDB code: 5zj1 was solved by H.Zhang, Q.Hao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.94 / 0.96
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	41.449, 59.944, 41.964, 90.00, 98.42, 90.00
R / Rfree (%)	13.1 / 15

The binding sites of Zinc atom in the Crystal Structure of Ndm-1 in Complex with D-Captopril Derivative Cyt- 14 (pdb code 5zj1). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Ndm-1 in Complex with D-Captopril Derivative Cyt- 14, PDB code: 5zj1:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Ndm-1 in Complex with D-Captopril Derivative Cyt- 14


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Ndm-1 in Complex with D-Captopril Derivative Cyt- 14 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:16.8 occ:1.00 NE2 A:HIS189 2.0 17.0 1.0 ND1 A:HIS122 2.0 16.6 1.0 NE2 A:HIS120 2.1 16.7 1.0 SG A:YT4303 2.3 17.1 1.0 CE1 A:HIS122 3.0 17.3 1.0 CE1 A:HIS189 3.0 17.8 1.0 CE1 A:HIS120 3.0 17.1 1.0 CD2 A:HIS120 3.0 16.6 1.0 CD2 A:HIS189 3.1 17.3 1.0 CG A:HIS122 3.1 16.4 1.0 CB A:YT4303 3.1 17.4 1.0 CB A:HIS122 3.4 16.3 1.0 ZN A:ZN302 3.7 16.9 1.0 SG A:CYS208 4.0 16.6 1.0 NE2 A:HIS122 4.1 17.8 1.0 ND1 A:HIS120 4.1 17.4 1.0 ND1 A:HIS189 4.1 17.9 1.0 OD1 A:ASP124 4.1 17.0 1.0 CB A:CYS208 4.1 17.4 1.0 CG A:HIS120 4.2 16.1 1.0 CD2 A:HIS122 4.2 17.1 1.0 CG A:HIS189 4.2 17.3 1.0 ND2 A:ASN220 4.4 23.8 1.0 CG2 A:THR190 4.5 18.1 1.0 CA A:YT4303 4.6 17.5 1.0 OD2 A:ASP124 4.8 17.8 1.0 CG A:ASP124 4.9 16.0 1.0 CA A:HIS122 4.9 15.7 1.0 O A:HOH500 4.9 20.4 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Ndm-1 in Complex with D-Captopril Derivative Cyt- 14


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Ndm-1 in Complex with D-Captopril Derivative Cyt- 14 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn302 b:16.9 occ:1.00 OD2 A:ASP124 1.9 17.8 1.0 NE2 A:HIS250 2.0 17.0 1.0 SG A:CYS208 2.3 16.6 1.0 SG A:YT4303 2.3 17.1 1.0 CG A:ASP124 2.9 16.0 1.0 CE1 A:HIS250 3.0 17.8 1.0 CD2 A:HIS250 3.1 17.5 1.0 OD1 A:ASP124 3.2 17.0 1.0 CB A:YT4303 3.4 17.4 1.0 CB A:CYS208 3.5 17.4 1.0 ZN A:ZN301 3.7 16.8 1.0 CA A:YT4303 3.8 17.5 1.0 O A:HOH537 4.0 21.5 1.0 ND1 A:HIS250 4.1 18.1 1.0 CG A:HIS250 4.2 17.3 1.0 CB A:ASP124 4.2 16.2 1.0 OAJ A:YT4303 4.3 23.3 1.0 CB A:SER249 4.3 17.3 1.0 NE2 A:HIS189 4.5 17.0 1.0 O A:HOH481 4.5 27.6 1.0 NE2 A:HIS120 4.6 16.7 1.0 CE1 A:HIS120 4.6 17.1 1.0 N A:YT4303 4.6 19.4 1.0 CE1 A:HIS189 4.6 17.8 1.0 OG A:SER249 4.6 17.0 1.0 CA A:CYS208 4.7 17.2 1.0 CAI A:YT4303 4.8 31.6 1.0 CE A:LYS125 4.9 18.1 1.0

H.Zhang, Q.Hao. Crystal Structure of Ndm-1 To Be Published.