Zinc in PDB 5ziy: Crystal Structure of Bacillus Cereus Flgl

The structure of Crystal Structure of Bacillus Cereus Flgl, PDB code: 5ziy was solved by H.J.Hong, T.H.Kim, W.S.Song, S.I.Yoon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.20
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	138.619, 57.986, 67.914, 90.00, 114.80, 90.00
R / Rfree (%)	21.2 / 25

The binding sites of Zinc atom in the Crystal Structure of Bacillus Cereus Flgl (pdb code 5ziy). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 7 binding sites of Zinc where determined in the Crystal Structure of Bacillus Cereus Flgl, PDB code: 5ziy:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7;

Zinc binding site 1 out of 7 in the Crystal Structure of Bacillus Cereus Flgl


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Bacillus Cereus Flgl within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:38.2 occ:1.00 OE2 A:GLU167 2.2 31.5 1.0 OE2 B:GLU141 2.3 33.7 1.0 O A:HOH443 2.6 47.9 1.0 OE1 B:GLU141 2.7 29.8 1.0 CD A:GLU167 2.8 30.7 1.0 OE1 A:GLU167 2.8 30.1 1.0 CD B:GLU141 2.8 30.2 1.0 CG A:GLU167 4.2 24.8 1.0 CG B:GLU141 4.4 26.7 1.0 NZ A:LYS161 4.9 31.5 1.0 CD A:LYS161 4.9 24.8 1.0

Zinc binding site 2 out of 7 in the Crystal Structure of Bacillus Cereus Flgl


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Bacillus Cereus Flgl within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn302 b:39.7 occ:1.00 OD1 B:ASP68 2.2 20.2 1.0 OE2 A:GLU129 2.5 30.5 1.0 O A:HOH428 2.5 24.3 1.0 OE1 A:GLU129 2.6 33.5 1.0 OD2 B:ASP68 2.9 19.2 1.0 CG B:ASP68 2.9 18.8 1.0 CD A:GLU129 2.9 29.1 1.0 NE2 A:GLN130 3.5 23.1 1.0 O B:HOH437 4.1 37.9 1.0 NE2 A:GLN75 4.2 32.7 1.0 O B:LYS64 4.3 21.5 1.0 CB B:ASP68 4.3 17.3 1.0 CG A:GLU129 4.4 23.0 1.0 ND2 A:ASN71 4.4 21.6 1.0 CD A:GLN130 4.5 22.2 1.0 N A:GLN130 4.6 20.3 1.0 CA B:ASP68 4.9 17.6 1.0 CE B:LYS64 5.0 34.2 1.0 N B:ASP68 5.0 19.0 1.0

Zinc binding site 3 out of 7 in the Crystal Structure of Bacillus Cereus Flgl


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Bacillus Cereus Flgl within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn303 b:39.3 occ:1.00 OE2 A:GLU229 2.0 25.8 1.0 O A:HOH447 2.4 21.0 1.0 CD A:GLU229 2.7 27.3 1.0 OE1 A:GLU229 2.8 28.4 1.0 O A:HOH445 3.4 41.5 1.0 CD A:LYS70 3.6 21.7 1.0 CG A:GLU229 4.2 25.3 1.0 NZ A:LYS232 4.6 31.4 1.0 O A:HOH415 5.0 18.8 1.0

Zinc binding site 4 out of 7 in the Crystal Structure of Bacillus Cereus Flgl


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Bacillus Cereus Flgl within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn304 b:56.0 occ:1.00 ND1 A:HIS54 2.2 37.9 1.0 CE1 A:HIS54 3.1 40.4 1.0 CG A:HIS54 3.2 36.5 1.0 CB A:HIS54 3.6 34.0 1.0 CA A:HIS54 4.1 32.6 1.0 NE2 A:HIS54 4.2 41.5 1.0 CD2 A:HIS54 4.3 39.7 1.0

Zinc binding site 5 out of 7 in the Crystal Structure of Bacillus Cereus Flgl


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of Bacillus Cereus Flgl within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn305 b:57.6 occ:1.00 OE2 B:GLU167 2.1 43.6 1.0 OE1 A:GLU141 2.6 37.4 1.0 OE2 A:GLU141 2.6 44.5 1.0 OE1 B:GLU167 2.8 40.2 1.0 CD B:GLU167 2.8 38.5 1.0 CD A:GLU141 2.9 37.5 1.0 CG B:GLU167 4.3 33.9 1.0 CG A:GLU141 4.4 33.4 1.0 O B:HOH435 4.4 43.4 1.0 CD B:LYS161 4.8 32.5 1.0 NZ B:LYS161 4.9 41.4 1.0

Zinc binding site 6 out of 7 in the Crystal Structure of Bacillus Cereus Flgl


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of Bacillus Cereus Flgl within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn306 b:67.7 occ:1.00 OE2 A:GLU77 3.0 42.0 1.0 OE1 A:GLU77 3.1 40.0 1.0 CD A:GLU77 3.4 35.2 1.0 CG A:MET225 4.4 27.4 1.0 CB A:MET225 4.9 21.0 1.0 CG A:GLU77 4.9 29.0 1.0

Zinc binding site 7 out of 7 in the Crystal Structure of Bacillus Cereus Flgl


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Crystal Structure of Bacillus Cereus Flgl within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn301 b:44.0 occ:1.00 OE2 B:GLU129 2.2 28.6 1.0 CD B:GLU129 2.9 29.7 1.0 OE1 B:GLU129 2.9 32.8 1.0 OD1 B:ASN71 4.2 24.4 1.0 ND2 B:ASN71 4.3 20.8 1.0 OD1 A:ASP68 4.3 22.1 1.0 CG B:GLU129 4.4 23.9 1.0 OD2 A:ASP68 4.6 23.4 1.0 CE A:LYS64 4.6 36.2 1.0 CG B:ASN71 4.7 23.5 1.0 CG A:ASP68 4.9 20.7 1.0 NE2 B:GLN130 4.9 22.0 1.0 CG A:LYS64 5.0 26.3 1.0

H.J.Hong, T.H.Kim, W.S.Song, H.J.Ko, G.S.Lee, S.G.Kang, P.H.Kim, S.I.Yoon. Crystal Structure of Flgl and Its Implications For Flagellar Assembly Sci Rep V. 8 14307 2018.
ISSN: ESSN 2045-2322
PubMed: 30250171
DOI: 10.1038/S41598-018-32460-9