Zinc in PDB 5yhy: Structure of Lactococcus Lactis Zitr, C30S Mutant

The structure of Structure of Lactococcus Lactis Zitr, C30S Mutant, PDB code: 5yhy was solved by Y.Song, H.Liu, R.Zhu, C.Yi, P.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.22 / 1.65
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	62.182, 62.182, 117.280, 90.00, 90.00, 90.00
R / Rfree (%)	20.6 / 22.6

The binding sites of Zinc atom in the Structure of Lactococcus Lactis Zitr, C30S Mutant (pdb code 5yhy). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of Lactococcus Lactis Zitr, C30S Mutant, PDB code: 5yhy:

Zinc binding site 1 out of 1 in the Structure of Lactococcus Lactis Zitr, C30S Mutant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Lactococcus Lactis Zitr, C30S Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:22.6 occ:1.00 OE1 A:GLU24 1.9 28.2 1.0 NE2 A:HIS108 2.0 22.1 1.0 NE2 A:HIS42 2.0 21.2 1.0 NE2 A:HIS112 2.0 25.1 1.0 CD A:GLU24 2.6 30.0 1.0 OE2 A:GLU24 2.7 33.7 1.0 CD2 A:HIS42 2.9 22.5 1.0 CE1 A:HIS108 3.0 24.0 1.0 CE1 A:HIS112 3.0 27.3 1.0 CD2 A:HIS108 3.0 21.9 1.0 CD2 A:HIS112 3.1 20.6 1.0 CE1 A:HIS42 3.1 25.5 1.0 CG A:GLU24 4.1 33.7 1.0 ND1 A:HIS108 4.1 21.3 1.0 CG A:HIS42 4.1 21.9 1.0 ND1 A:HIS112 4.1 25.1 1.0 CG A:HIS108 4.2 22.6 1.0 ND1 A:HIS42 4.2 22.5 1.0 CG A:HIS112 4.2 25.5 1.0 CD1 A:LEU26 4.5 25.3 1.0 CB A:GLU24 4.7 31.1 1.0 CB A:GLU41 4.9 23.2 1.0 CB A:SER38 4.9 30.8 1.0 CD2 A:LEU26 4.9 22.8 1.0 O A:HOH455 5.0 37.4 1.0 O A:SER38 5.0 22.7 1.0

Y.Song, H.Liu, R.Zhu, C.Yi, P.Chen. Structure of Lactococcus Lactis Zitr Proc.Natl.Acad.Sci.Usa 2017.
ISSN: ESSN 1091-6490
DOI: 10.1073/PNAS.1708563115