Zinc in PDB 5y1w: Crystal Structure of Plasmodium Falciparum Aminopeptidase N with Magnesium Bound to Active Site Zinc

The structure of Crystal Structure of Plasmodium Falciparum Aminopeptidase N with Magnesium Bound to Active Site Zinc, PDB code: 5y1w was solved by A.K.Marapaka, A.Addlagatta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.67 / 1.56
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	74.421, 109.205, 112.477, 90.00, 90.00, 90.00
R / Rfree (%)	17 / 20.6

The structure of Crystal Structure of Plasmodium Falciparum Aminopeptidase N with Magnesium Bound to Active Site Zinc also contains other interesting chemical elements:

Magnesium

(Mg)

3 atoms

The binding sites of Zinc atom in the Crystal Structure of Plasmodium Falciparum Aminopeptidase N with Magnesium Bound to Active Site Zinc (pdb code 5y1w). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Plasmodium Falciparum Aminopeptidase N with Magnesium Bound to Active Site Zinc, PDB code: 5y1w:

Zinc binding site 1 out of 1 in the Crystal Structure of Plasmodium Falciparum Aminopeptidase N with Magnesium Bound to Active Site Zinc


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Plasmodium Falciparum Aminopeptidase N with Magnesium Bound to Active Site Zinc within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1101 b:14.8 occ:1.00 OE1 A:GLU519 2.0 13.7 1.0 O A:HOH1238 2.0 14.7 1.0 NE2 A:HIS500 2.0 12.7 1.0 NE2 A:HIS496 2.1 12.3 1.0 O A:HOH1265 2.3 16.0 1.0 OE2 A:GLU519 2.6 14.7 1.0 CD A:GLU519 2.6 14.1 1.0 CE1 A:HIS500 3.0 12.4 1.0 CD2 A:HIS496 3.0 14.2 1.0 CD2 A:HIS500 3.0 12.4 1.0 CE1 A:HIS496 3.0 13.4 1.0 MG A:MG1102 3.2 25.8 1.0 O A:HOH1397 3.7 16.9 1.0 O A:HOH1219 3.8 30.6 1.0 OH A:TYR580 4.0 15.6 1.0 ND1 A:HIS500 4.1 12.6 1.0 O A:HOH1777 4.1 29.3 1.0 CG A:GLU519 4.1 13.3 1.0 ND1 A:HIS496 4.2 13.5 1.0 CG A:HIS496 4.2 12.8 1.0 CG A:HIS500 4.2 12.6 1.0 CE2 A:TYR580 4.2 14.2 1.0 OE1 A:GLU463 4.4 13.2 1.0 O A:HOH1202 4.4 20.6 1.0 OE1 A:GLU497 4.5 15.4 1.0 CZ A:TYR580 4.5 15.4 1.0 NZ A:LYS518 4.7 14.5 1.0 O A:HOH1703 4.7 26.4 1.0 CG2 A:THR522 4.8 13.1 1.0 CB A:GLU519 4.8 13.4 1.0 OE2 A:GLU497 4.8 16.5 1.0 OE2 A:GLU463 4.8 13.1 1.0 CA A:GLU519 4.9 12.0 1.0 CD A:GLU463 4.9 13.2 1.0 CB A:THR522 4.9 12.3 1.0

A.K.Marapaka, A.Addlagatta. Crystal Structure of Plasmodium Falciparum Aminopeptidase N with Magnesium Bound to Active Site Zinc To Be Published.