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Zinc in PDB 5y0u: The Solution Structure of AEBP2 C2H2 Zinc Fingers

Zinc Binding Sites:

The binding sites of Zinc atom in the The Solution Structure of AEBP2 C2H2 Zinc Fingers (pdb code 5y0u). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the The Solution Structure of AEBP2 C2H2 Zinc Fingers, PDB code: 5y0u:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 5y0u

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Zinc binding site 1 out of 3 in the The Solution Structure of AEBP2 C2H2 Zinc Fingers


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Solution Structure of AEBP2 C2H2 Zinc Fingers within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:0.0
occ:1.00
SG A:CYS268 1.7 0.0 1.0
SG A:CYS263 1.7 0.0 1.0
NE2 A:HIS281 1.9 0.0 1.0
NE2 A:HIS286 2.3 0.0 1.0
HB2 A:ALA270 2.6 0.0 1.0
CE1 A:HIS281 2.9 0.0 1.0
HB3 A:CYS268 2.9 0.0 1.0
CB A:CYS268 3.0 0.0 1.0
HE1 A:HIS281 3.1 0.0 1.0
CD2 A:HIS281 3.1 0.0 1.0
CE1 A:HIS286 3.1 0.0 1.0
HE1 A:HIS286 3.2 0.0 1.0
CB A:CYS263 3.4 0.0 1.0
HD2 A:HIS281 3.4 0.0 1.0
CD2 A:HIS286 3.5 0.0 1.0
HB3 A:TRP265 3.6 0.0 1.0
CB A:ALA270 3.6 0.0 1.0
HB2 A:CYS268 3.7 0.0 1.0
HB2 A:CYS263 3.7 0.0 1.0
HB3 A:CYS263 3.7 0.0 1.0
O A:CYS268 3.7 0.0 1.0
HD2 A:HIS286 3.9 0.0 1.0
HB3 A:ALA270 3.9 0.0 1.0
ND1 A:HIS281 4.0 0.0 1.0
H A:ALA270 4.0 0.0 1.0
C A:CYS268 4.1 0.0 1.0
CA A:CYS268 4.1 0.0 1.0
HB1 A:ALA270 4.1 0.0 1.0
CG A:HIS281 4.1 0.0 1.0
H A:CYS263 4.2 0.0 1.0
HE3 A:TRP265 4.3 0.0 1.0
HD12 A:ILE282 4.3 0.0 1.0
ND1 A:HIS286 4.4 0.0 1.0
N A:ALA270 4.4 0.0 1.0
O A:ALA270 4.5 0.0 1.0
CB A:TRP265 4.5 0.0 1.0
HB2 A:TRP265 4.5 0.0 1.0
CG A:HIS286 4.6 0.0 1.0
CA A:CYS263 4.6 0.0 1.0
HA A:CYS268 4.6 0.0 1.0
CA A:ALA270 4.6 0.0 1.0
N A:CYS263 4.8 0.0 1.0
H A:TRP265 4.8 0.0 1.0
O A:CYS263 4.8 0.0 1.0
HD1 A:HIS281 4.9 0.0 1.0
HD13 A:ILE282 4.9 0.0 1.0
C A:ALA270 5.0 0.0 1.0
CE3 A:TRP265 5.0 0.0 1.0
C A:CYS263 5.0 0.0 1.0
N A:GLN269 5.0 0.0 1.0
HB A:ILE285 5.0 0.0 1.0

Zinc binding site 2 out of 3 in 5y0u

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Zinc binding site 2 out of 3 in the The Solution Structure of AEBP2 C2H2 Zinc Fingers


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Solution Structure of AEBP2 C2H2 Zinc Fingers within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn402

b:0.0
occ:1.00
SG A:CYS302 1.7 0.0 1.0
SG A:CYS297 1.7 0.0 1.0
NE2 A:HIS318 1.9 0.0 1.0
NE2 A:HIS322 2.3 0.0 1.0
CD2 A:HIS318 2.8 0.0 1.0
HB3 A:TRP299 2.9 0.0 1.0
HD2 A:HIS318 2.9 0.0 1.0
CE1 A:HIS318 3.1 0.0 1.0
HB2 A:TRP299 3.2 0.0 1.0
CE1 A:HIS322 3.2 0.0 1.0
CB A:CYS297 3.2 0.0 1.0
CB A:CYS302 3.2 0.0 1.0
HE1 A:HIS322 3.3 0.0 1.0
HB3 A:CYS297 3.4 0.0 1.0
CD2 A:HIS322 3.4 0.0 1.0
HB3 A:CYS302 3.4 0.0 1.0
HE1 A:HIS318 3.5 0.0 1.0
CB A:TRP299 3.5 0.0 1.0
HB2 A:CYS297 3.5 0.0 1.0
HB2 A:CYS302 3.6 0.0 1.0
HD2 A:HIS322 3.7 0.0 1.0
H A:TRP299 3.7 0.0 1.0
HB3 A:TYR305 3.9 0.0 1.0
CG A:HIS318 4.0 0.0 1.0
ND1 A:HIS318 4.1 0.0 1.0
O A:TRP299 4.1 0.0 1.0
HE3 A:TRP299 4.3 0.0 1.0
ND1 A:HIS322 4.4 0.0 1.0
H A:CYS302 4.4 0.0 1.0
CA A:TRP299 4.4 0.0 1.0
N A:TRP299 4.4 0.0 1.0
CA A:CYS302 4.5 0.0 1.0
CG A:HIS322 4.5 0.0 1.0
CA A:CYS297 4.5 0.0 1.0
CG A:TRP299 4.6 0.0 1.0
C A:TRP299 4.7 0.0 1.0
HG22 A:VAL304 4.7 0.0 1.0
HA A:CYS302 4.7 0.0 1.0
HA A:TYR305 4.8 0.0 1.0
N A:CYS302 4.8 0.0 1.0
CB A:TYR305 4.8 0.0 1.0
HA A:CYS297 4.8 0.0 1.0
HB2 A:TYR305 4.8 0.0 1.0
C A:CYS297 4.9 0.0 1.0

Zinc binding site 3 out of 3 in 5y0u

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Zinc binding site 3 out of 3 in the The Solution Structure of AEBP2 C2H2 Zinc Fingers


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of The Solution Structure of AEBP2 C2H2 Zinc Fingers within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn403

b:0.0
occ:1.00
SG A:CYS335 1.7 0.0 1.0
SG A:CYS330 1.7 0.0 1.0
NE2 A:HIS348 1.8 0.0 1.0
NE2 A:HIS352 2.3 0.0 1.0
CD2 A:HIS348 2.8 0.0 1.0
HB3 A:CYS335 2.8 0.0 1.0
CB A:CYS335 2.9 0.0 1.0
CE1 A:HIS348 2.9 0.0 1.0
CB A:CYS330 3.0 0.0 1.0
HB2 A:CYS330 3.0 0.0 1.0
HD2 A:HIS348 3.0 0.0 1.0
CD2 A:HIS352 3.2 0.0 1.0
CE1 A:HIS352 3.2 0.0 1.0
HB3 A:CYS330 3.3 0.0 1.0
HE1 A:HIS348 3.3 0.0 1.0
HB2 A:CYS335 3.4 0.0 1.0
HD2 A:HIS352 3.4 0.0 1.0
HE1 A:HIS352 3.5 0.0 1.0
HB A:VAL332 3.6 0.0 1.0
HB1 A:ALA337 3.9 0.0 1.0
CG A:HIS348 4.0 0.0 1.0
HG21 A:VAL332 4.0 0.0 1.0
ND1 A:HIS348 4.0 0.0 1.0
HG23 A:VAL332 4.0 0.0 1.0
HB2 A:ALA337 4.0 0.0 1.0
CA A:CYS335 4.2 0.0 1.0
ND1 A:HIS352 4.3 0.0 1.0
H A:VAL332 4.3 0.0 1.0
CG A:HIS352 4.3 0.0 1.0
CA A:CYS330 4.3 0.0 1.0
C A:CYS335 4.3 0.0 1.0
CG2 A:VAL332 4.4 0.0 1.0
CB A:VAL332 4.5 0.0 1.0
HA A:CYS330 4.5 0.0 1.0
CB A:ALA337 4.5 0.0 1.0
H A:ASN336 4.6 0.0 1.0
HA A:CYS335 4.6 0.0 1.0
N A:ASN336 4.6 0.0 1.0
O A:CYS335 4.8 0.0 1.0
H A:VAL331 4.8 0.0 1.0
HA A:VAL349 4.9 0.0 1.0
HD1 A:HIS348 4.9 0.0 1.0
N A:ALA337 5.0 0.0 1.0

Reference:

A.Sun, F.Li, Z.Liu, Y.Jiang, J.Zhang, J.Wu, Y.Shi. Structural and Biochemical Insights Into Human Zinc Finger Protein AEBP2 Reveals Interactions with RBBP4. Protein Cell V. 9 738 2018.
ISSN: ESSN 1674-8018
PubMed: 29134516
DOI: 10.1007/S13238-017-0483-6
Page generated: Wed Dec 16 11:21:48 2020

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