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Zinc in PDB 5y06: Structural Characterization of MSMEG_4306 From Mycobacterium Smegmatis

Protein crystallography data

The structure of Structural Characterization of MSMEG_4306 From Mycobacterium Smegmatis, PDB code: 5y06 was solved by A.Kumar, S.Karthikeyan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 66.34 / 2.61
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 76.600, 76.600, 84.811, 90.00, 90.00, 120.00
R / Rfree (%) 24 / 27.1

Zinc Binding Sites:

The binding sites of Zinc atom in the Structural Characterization of MSMEG_4306 From Mycobacterium Smegmatis (pdb code 5y06). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structural Characterization of MSMEG_4306 From Mycobacterium Smegmatis, PDB code: 5y06:

Zinc binding site 1 out of 1 in 5y06

Go back to Zinc Binding Sites List in 5y06
Zinc binding site 1 out of 1 in the Structural Characterization of MSMEG_4306 From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structural Characterization of MSMEG_4306 From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn302

b:77.0
occ:1.00
SG A:CYS233 2.4 71.6 1.0
SG A:CYS204 2.5 64.5 1.0
SG A:CYS207 2.5 82.7 1.0
SG A:CYS230 2.5 78.3 1.0
CB A:CYS204 2.9 64.7 1.0
CB A:CYS230 3.3 73.0 1.0
CB A:CYS233 3.5 72.1 1.0
CB A:CYS207 3.5 79.8 1.0
N A:CYS207 3.6 73.9 1.0
N A:CYS233 4.0 88.9 1.0
CA A:CYS207 4.1 76.8 1.0
CA A:CYS204 4.3 67.2 1.0
CA A:CYS233 4.4 79.2 1.0
CG2 A:ILE209 4.4 82.7 1.0
CB A:ALA206 4.5 64.0 1.0
N A:ARG208 4.5 84.4 1.0
C A:CYS207 4.6 79.2 1.0
C A:ALA206 4.7 71.6 1.0
CA A:CYS230 4.8 76.9 1.0
N A:ALA206 4.8 73.6 1.0
C A:CYS204 4.8 62.1 1.0
CB A:GLU232 4.8 92.5 1.0
CA A:ALA206 4.9 69.5 1.0

Reference:

A.Kumar, S.Karthikeyan. Crystal Structure of the MSMEG_4306 Gene Product From Mycobacterium Smegmatis Acta Crystallogr F Struct V. 74 166 2018BIOL Commun.
ISSN: ESSN 2053-230X
PubMed: 29497021
DOI: 10.1107/S2053230X18002236
Page generated: Mon Oct 28 15:20:44 2024

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