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Zinc in PDB 5xyn: The Crystal Structure of CSM2-PSY3-SHU1-SHU2 Complex From Budding Yeast

Protein crystallography data

The structure of The Crystal Structure of CSM2-PSY3-SHU1-SHU2 Complex From Budding Yeast, PDB code: 5xyn was solved by S.Zhang, T.Zhang, J.Ding, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.33 / 3.30
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 174.240, 174.240, 102.870, 90.00, 90.00, 90.00
R / Rfree (%) 21.7 / 25.4

Zinc Binding Sites:

The binding sites of Zinc atom in the The Crystal Structure of CSM2-PSY3-SHU1-SHU2 Complex From Budding Yeast (pdb code 5xyn). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Crystal Structure of CSM2-PSY3-SHU1-SHU2 Complex From Budding Yeast, PDB code: 5xyn:

Zinc binding site 1 out of 1 in 5xyn

Go back to Zinc Binding Sites List in 5xyn
Zinc binding site 1 out of 1 in the The Crystal Structure of CSM2-PSY3-SHU1-SHU2 Complex From Budding Yeast


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of CSM2-PSY3-SHU1-SHU2 Complex From Budding Yeast within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn301

b:21.5
occ:1.00
ND1 D:HIS178 2.2 22.0 1.0
SG D:CYS114 2.3 29.0 1.0
SG D:CYS176 2.3 23.4 1.0
SG D:CYS116 2.3 21.3 1.0
CB D:CYS116 2.7 24.8 1.0
CE1 D:HIS178 3.1 24.2 1.0
CB D:CYS114 3.2 26.0 1.0
CG D:HIS178 3.2 22.8 1.0
CB D:CYS176 3.3 21.5 1.0
CB D:HIS178 3.6 21.4 1.0
CA D:CYS116 3.9 23.6 1.0
N D:CYS116 4.0 23.0 1.0
NE2 D:HIS178 4.2 32.1 1.0
N D:HIS178 4.2 24.3 1.0
CD2 D:HIS178 4.3 27.2 1.0
CA D:HIS178 4.4 26.5 1.0
CG2 D:ILE105 4.5 24.5 1.0
CB D:PHE119 4.5 25.5 1.0
CA D:CYS114 4.6 23.4 1.0
CA D:CYS176 4.7 20.2 1.0
N D:LEU179 4.8 23.2 1.0
C D:CYS116 4.8 25.0 1.0
N D:PHE119 4.8 30.8 1.0
C D:CYS114 4.8 25.2 1.0
N D:SER177 4.8 23.6 1.0
C D:CYS176 4.9 24.3 1.0
CD1 D:ILE105 4.9 22.9 1.0

Reference:

S.Zhang, L.Wang, Y.Tao, T.Bai, R.Lu, T.Zhang, J.Chen, J.Ding. Structural Basis For the Functional Role of the Shu Complex in Homologous Recombination. Nucleic Acids Res. V. 45 13068 2017.
ISSN: ESSN 1362-4962
PubMed: 29069504
DOI: 10.1093/NAR/GKX992
Page generated: Wed Dec 16 11:21:38 2020

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