Zinc in PDB 5xt6: A Sulfur-Transferring Catalytic Intermediate of Sufs-Sufu Complex From Bacillus Subtilis

Enzymatic activity of A Sulfur-Transferring Catalytic Intermediate of Sufs-Sufu Complex From Bacillus Subtilis

All present enzymatic activity of A Sulfur-Transferring Catalytic Intermediate of Sufs-Sufu Complex From Bacillus Subtilis:
2.8.1.7;

Protein crystallography data

The structure of A Sulfur-Transferring Catalytic Intermediate of Sufs-Sufu Complex From Bacillus Subtilis, PDB code: 5xt6 was solved by T.Fujishiro, K.Kunichika, Y.Takahashi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.29 / 3.50
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 73.930, 73.930, 367.740, 90.00, 90.00, 120.00
R / Rfree (%) 22.3 / 26.2

Zinc Binding Sites:

The binding sites of Zinc atom in the A Sulfur-Transferring Catalytic Intermediate of Sufs-Sufu Complex From Bacillus Subtilis (pdb code 5xt6). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the A Sulfur-Transferring Catalytic Intermediate of Sufs-Sufu Complex From Bacillus Subtilis, PDB code: 5xt6:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 5xt6

Go back to Zinc Binding Sites List in 5xt6
Zinc binding site 1 out of 2 in the A Sulfur-Transferring Catalytic Intermediate of Sufs-Sufu Complex From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of A Sulfur-Transferring Catalytic Intermediate of Sufs-Sufu Complex From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn201

b:81.6
occ:1.00
OD2 D:ASP43 2.0 0.2 1.0
ND1 B:HIS342 2.1 0.1 1.0
SG D:CYS128 2.3 0.6 1.0
SG D:CYS66 2.3 0.6 1.0
CG D:ASP43 2.7 0.2 1.0
OD1 D:ASP43 2.8 0.9 1.0
CE1 B:HIS342 3.0 0.1 1.0
CG B:HIS342 3.2 0.0 1.0
CB D:CYS66 3.2 0.6 1.0
CB D:CYS128 3.4 0.3 1.0
CB B:HIS342 3.6 0.4 1.0
OG D:SER69 4.0 0.1 1.0
ND2 D:ASN38 4.1 0.5 1.0
NE2 B:HIS342 4.1 0.6 1.0
CB D:ASP43 4.2 0.1 1.0
N D:CYS66 4.2 0.6 1.0
CA D:CYS128 4.2 0.4 1.0
NE D:ARG125 4.2 0.2 1.0
CD2 B:HIS342 4.2 0.9 1.0
CA D:CYS66 4.3 0.3 1.0
CB D:SER69 4.3 0.7 1.0
NH1 D:ARG125 4.5 0.3 1.0
CE1 B:HIS340 4.6 0.9 1.0
ND1 B:HIS340 4.7 0.2 1.0
CZ D:ARG125 4.7 0.1 1.0
OG1 D:THR40 5.0 0.9 1.0

Zinc binding site 2 out of 2 in 5xt6

Go back to Zinc Binding Sites List in 5xt6
Zinc binding site 2 out of 2 in the A Sulfur-Transferring Catalytic Intermediate of Sufs-Sufu Complex From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of A Sulfur-Transferring Catalytic Intermediate of Sufs-Sufu Complex From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn201

b:95.2
occ:1.00
OD1 C:ASP43 2.0 0.9 1.0
ND1 A:HIS342 2.2 0.0 1.0
SG C:CYS128 2.4 0.9 1.0
SG C:CYS66 2.4 0.2 1.0
OD2 C:ASP43 2.6 0.0 1.0
CG C:ASP43 2.6 0.4 1.0
CE1 A:HIS342 3.1 1.0 1.0
CG A:HIS342 3.2 1.0 1.0
CB C:CYS66 3.3 0.5 1.0
CB C:CYS128 3.3 0.1 1.0
CB A:HIS342 3.6 0.3 1.0
CB C:ASP43 4.1 0.3 1.0
OG C:SER69 4.1 0.4 1.0
CA C:CYS128 4.1 0.3 1.0
NE C:ARG125 4.1 0.1 1.0
NE2 A:HIS342 4.2 0.7 1.0
N C:CYS66 4.3 0.4 1.0
CD2 A:HIS342 4.3 0.6 1.0
ND2 C:ASN38 4.3 0.6 1.0
CA C:CYS66 4.4 0.6 1.0
CB C:SER69 4.5 0.9 1.0
NH2 C:ARG125 4.5 0.1 1.0
CZ C:ARG125 4.7 0.1 1.0
CE1 A:HIS340 4.8 96.5 1.0
N C:ASP43 5.0 1.0 1.0
CD C:ARG125 5.0 0.9 1.0

Reference:

T.Fujishiro, T.Terahata, K.Kunichika, N.Yokoyama, C.Maruyama, K.Asai, Y.Takahashi. Zinc-Ligand Swapping Mediated Complex Formation and Sulfur Transfer Between Sufs and Sufu For Iron-Sulfur Cluster Biogenesis in Bacillus Subtilis J. Am. Chem. Soc. V. 139 18464 2017.
ISSN: ESSN 1520-5126
PubMed: 29235855
DOI: 10.1021/JACS.7B11307
Page generated: Wed Dec 16 11:21:13 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy