Zinc in PDB 5xpx: Structure Elucidation of Truncated AMS3 Lipase From An Antarctic Pseudomonas

All present enzymatic activity of Structure Elucidation of Truncated AMS3 Lipase From An Antarctic Pseudomonas:
3.1.1.3;

The structure of Structure Elucidation of Truncated AMS3 Lipase From An Antarctic Pseudomonas, PDB code: 5xpx was solved by R.N.Z.R.A.Rahman, W.Latip, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 2.77
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	86.753, 94.693, 126.431, 90.00, 90.00, 90.00
R / Rfree (%)	22.2 / 27.7

The structure of Structure Elucidation of Truncated AMS3 Lipase From An Antarctic Pseudomonas also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

The binding sites of Zinc atom in the Structure Elucidation of Truncated AMS3 Lipase From An Antarctic Pseudomonas (pdb code 5xpx). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure Elucidation of Truncated AMS3 Lipase From An Antarctic Pseudomonas, PDB code: 5xpx:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure Elucidation of Truncated AMS3 Lipase From An Antarctic Pseudomonas


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure Elucidation of Truncated AMS3 Lipase From An Antarctic Pseudomonas within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:24.8 occ:1.00 OD2 A:ASP238 1.9 19.7 1.0 OD1 A:ASP61 2.0 21.1 1.0 NE2 A:HIS87 2.2 21.0 1.0 CE1 A:HIS81 2.3 13.4 1.0 CG A:ASP238 2.7 20.7 1.0 CG A:ASP61 2.8 21.9 1.0 OD1 A:ASP238 2.9 20.9 1.0 OD2 A:ASP61 2.9 21.8 1.0 ND1 A:HIS81 3.1 13.1 1.0 CE1 A:HIS87 3.1 20.9 1.0 CD2 A:HIS87 3.3 20.3 1.0 NE2 A:HIS81 3.3 13.7 1.0 OG A:SER58 4.0 16.6 1.0 CB A:ASP238 4.1 21.1 1.0 CB A:ASP61 4.2 21.6 1.0 ND1 A:HIS87 4.3 20.6 1.0 CG A:HIS81 4.4 13.5 1.0 CG A:HIS87 4.4 20.1 1.0 O A:HOH601 4.4 14.8 1.0 CD2 A:HIS81 4.4 13.7 1.0 CD1 A:TRP60 4.6 19.0 1.0 N A:ASP61 4.7 19.3 1.0 CA A:ASP61 4.7 20.7 1.0 CD2 A:HIS85 4.8 20.3 1.0 CB A:HIS85 4.9 19.7 1.0 CG A:HIS85 4.9 19.9 1.0 CB A:SER58 5.0 17.3 1.0 CZ2 A:TRP211 5.0 20.4 1.0

Zinc binding site 2 out of 2 in the Structure Elucidation of Truncated AMS3 Lipase From An Antarctic Pseudomonas


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure Elucidation of Truncated AMS3 Lipase From An Antarctic Pseudomonas within 5.0Å range: probe atom residue distance (Å) B Occ E:Zn501 b:26.9 occ:1.00 OD2 E:ASP238 1.8 15.6 1.0 OD1 E:ASP61 2.0 16.1 1.0 NE2 E:HIS81 2.1 16.1 1.0 NE2 E:HIS87 2.3 19.5 1.0 CG E:ASP238 2.7 15.9 1.0 CG E:ASP61 2.8 17.0 1.0 OD2 E:ASP61 2.9 17.2 1.0 CD2 E:HIS81 2.9 16.0 1.0 OD1 E:ASP238 3.0 16.2 1.0 CE1 E:HIS81 3.2 16.1 1.0 CE1 E:HIS87 3.2 20.3 1.0 CD2 E:HIS87 3.2 20.0 1.0 CB E:ASP238 4.1 16.3 1.0 OG E:SER58 4.1 15.2 1.0 CG E:HIS81 4.1 16.0 1.0 O E:HOH602 4.2 9.8 1.0 CB E:ASP61 4.2 17.0 1.0 ND1 E:HIS81 4.2 15.9 1.0 ND1 E:HIS87 4.3 20.2 1.0 CG E:HIS87 4.4 19.7 1.0 CD1 E:TRP60 4.4 16.0 1.0 CA E:ASP61 4.7 17.7 1.0 N E:ASP61 4.8 16.7 1.0 O E:ASP238 4.8 16.9 1.0 CD2 E:HIS85 4.8 19.0 1.0 CD1 E:TYR77 4.9 14.9 1.0 CB E:HIS85 4.9 19.0 1.0

R.N.Z.R.A.Rahman, W.Latip. Structure Elucidation of Truncated AMS3 Lipase From An Antarctic Pseudomonas To Be Published.