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Zinc in PDB 5xm7: Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with (S)-2-((2S,3R)-3-Amino-2-Hydroxy-4-Phenylbutanamido)-N-Hydroxy- 4-Methylpentanamide

Protein crystallography data

The structure of Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with (S)-2-((2S,3R)-3-Amino-2-Hydroxy-4-Phenylbutanamido)-N-Hydroxy- 4-Methylpentanamide, PDB code: 5xm7 was solved by A.K.Marapaka, Y.Zhang, A.Addlagatta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.98 / 1.96
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 74.462, 109.103, 112.372, 90.00, 90.00, 90.00
R / Rfree (%) 16.8 / 21.9

Other elements in 5xm7:

The structure of Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with (S)-2-((2S,3R)-3-Amino-2-Hydroxy-4-Phenylbutanamido)-N-Hydroxy- 4-Methylpentanamide also contains other interesting chemical elements:

Magnesium (Mg) 3 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with (S)-2-((2S,3R)-3-Amino-2-Hydroxy-4-Phenylbutanamido)-N-Hydroxy- 4-Methylpentanamide (pdb code 5xm7). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with (S)-2-((2S,3R)-3-Amino-2-Hydroxy-4-Phenylbutanamido)-N-Hydroxy- 4-Methylpentanamide, PDB code: 5xm7:

Zinc binding site 1 out of 1 in 5xm7

Go back to Zinc Binding Sites List in 5xm7
Zinc binding site 1 out of 1 in the Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with (S)-2-((2S,3R)-3-Amino-2-Hydroxy-4-Phenylbutanamido)-N-Hydroxy- 4-Methylpentanamide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with (S)-2-((2S,3R)-3-Amino-2-Hydroxy-4-Phenylbutanamido)-N-Hydroxy- 4-Methylpentanamide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1101

b:26.0
occ:1.00
OE1 A:GLU519 2.1 20.8 1.0
O2 A:89X1116 2.1 27.7 1.0
NE2 A:HIS496 2.1 23.0 1.0
NE2 A:HIS500 2.2 23.5 1.0
O1 A:89X1116 2.2 29.0 1.0
CA A:89X1116 2.8 28.2 1.0
CD A:GLU519 2.8 21.7 1.0
OE2 A:GLU519 2.9 23.8 1.0
N A:89X1116 3.0 31.8 1.0
CD2 A:HIS496 3.0 26.7 1.0
CD2 A:HIS500 3.1 22.6 1.0
CE1 A:HIS496 3.2 28.3 1.0
CE1 A:HIS500 3.2 23.1 1.0
O A:HOH1208 3.4 30.8 1.0
OH A:TYR580 4.1 24.7 1.0
OE1 A:GLU463 4.1 29.0 1.0
CE2 A:TYR580 4.1 27.1 1.0
CG A:HIS496 4.2 26.6 1.0
ND1 A:HIS496 4.2 27.2 1.0
ND1 A:HIS500 4.3 24.3 1.0
CG A:HIS500 4.3 24.2 1.0
CB A:89X1116 4.3 28.7 1.0
CG A:GLU519 4.3 22.1 1.0
OE1 A:GLU497 4.4 27.9 1.0
CZ A:TYR580 4.5 25.4 1.0
N2 A:89X1116 4.7 30.3 1.0
CG2 A:THR522 4.7 26.2 1.0
CD A:GLU463 4.7 27.1 1.0
OE2 A:GLU463 4.8 27.9 1.0
OE2 A:GLU497 4.8 27.7 1.0
CB A:GLU519 4.8 22.6 1.0
CA A:GLU519 4.9 20.9 1.0
C7 A:89X1116 4.9 38.3 1.0

Reference:

A.K.Marapaka, A.Addlagatta. Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with (S)-2-((2S,3R)-3-Amino-2-Hydroxy-4-Phenylbutanamido) -N-Hydroxy-4-Methylpentanamide To Be Published.
Page generated: Wed Dec 16 11:20:47 2020

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