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Zinc in PDB 5xht: The Phd Finger of Human KIAA1045 Protein

Zinc Binding Sites:

The binding sites of Zinc atom in the The Phd Finger of Human KIAA1045 Protein (pdb code 5xht). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The Phd Finger of Human KIAA1045 Protein, PDB code: 5xht:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 5xht

Go back to Zinc Binding Sites List in 5xht
Zinc binding site 1 out of 2 in the The Phd Finger of Human KIAA1045 Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Phd Finger of Human KIAA1045 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.0
occ:1.00
SG A:CYS3 2.3 0.0 1.0
ND1 A:HIS25 2.3 0.0 1.0
SG A:CYS28 2.3 0.0 1.0
SG A:CYS6 2.3 0.0 1.0
CG A:HIS25 2.6 0.0 1.0
HB2 A:HIS25 2.7 0.0 1.0
HB A:VAL5 2.8 0.0 1.0
CE1 A:HIS25 2.9 0.0 1.0
H A:HIS25 3.2 0.0 1.0
HB2 A:CYS6 3.2 0.0 1.0
CB A:HIS25 3.2 0.0 1.0
CD2 A:HIS25 3.3 0.0 1.0
HB2 A:CYS28 3.3 0.0 1.0
CB A:CYS6 3.4 0.0 1.0
HB3 A:CYS3 3.4 0.0 1.0
NE2 A:HIS25 3.4 0.0 1.0
HE1 A:HIS25 3.4 0.0 1.0
CB A:CYS3 3.5 0.0 1.0
CB A:CYS28 3.5 0.0 1.0
HB2 A:CYS3 3.7 0.0 1.0
HG12 A:VAL5 3.7 0.0 1.0
CB A:VAL5 3.8 0.0 1.0
N A:CYS6 3.8 0.0 1.0
H A:CYS6 3.9 0.0 1.0
HB3 A:HIS25 3.9 0.0 1.0
N A:HIS25 4.0 0.0 1.0
HB3 A:CYS28 4.0 0.0 1.0
C A:VAL5 4.1 0.0 1.0
HD2 A:HIS25 4.1 0.0 1.0
H A:VAL5 4.1 0.0 1.0
HE2 A:HIS25 4.2 0.0 1.0
CA A:HIS25 4.2 0.0 1.0
HB3 A:CYS6 4.2 0.0 1.0
CA A:CYS6 4.2 0.0 1.0
CG1 A:VAL5 4.2 0.0 1.0
CA A:VAL5 4.4 0.0 1.0
HG11 A:VAL5 4.5 0.0 1.0
O A:VAL5 4.5 0.0 1.0
H A:CYS28 4.6 0.0 1.0
HA A:PHE24 4.6 0.0 1.0
N A:VAL5 4.7 0.0 1.0
HG22 A:VAL5 4.8 0.0 1.0
CA A:CYS28 4.8 0.0 1.0
HA A:CYS6 4.8 0.0 1.0
H A:GLU7 4.8 0.0 1.0
CG2 A:VAL5 4.8 0.0 1.0
CA A:CYS3 4.9 0.0 1.0
HA A:HIS25 4.9 0.0 1.0
HA A:CYS28 4.9 0.0 1.0

Zinc binding site 2 out of 2 in 5xht

Go back to Zinc Binding Sites List in 5xht
Zinc binding site 2 out of 2 in the The Phd Finger of Human KIAA1045 Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Phd Finger of Human KIAA1045 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn202

b:0.0
occ:1.00
SG A:CYS20 2.3 0.0 1.0
SG A:CYS55 2.3 0.0 1.0
SG A:CYS58 2.3 0.0 1.0
SG A:CYS17 2.4 0.0 1.0
HB2 A:CYS55 3.3 0.0 1.0
HB3 A:CYS17 3.3 0.0 1.0
HB2 A:CYS20 3.4 0.0 1.0
HB2 A:CYS58 3.4 0.0 1.0
CB A:CYS58 3.5 0.0 1.0
CB A:CYS55 3.5 0.0 1.0
CB A:CYS20 3.5 0.0 1.0
CB A:CYS17 3.5 0.0 1.0
H A:CYS20 3.6 0.0 1.0
HA A:CYS58 3.8 0.0 1.0
O A:TRP53 3.9 0.0 1.0
HB2 A:CYS17 4.0 0.0 1.0
HB3 A:CYS55 4.1 0.0 1.0
CA A:CYS58 4.1 0.0 1.0
N A:CYS20 4.2 0.0 1.0
CA A:CYS20 4.3 0.0 1.0
HA A:CYS20 4.3 0.0 1.0
HB3 A:CYS20 4.3 0.0 1.0
H A:CYS58 4.4 0.0 1.0
HB2 A:PRO16 4.4 0.0 1.0
HB3 A:CYS58 4.4 0.0 1.0
HB2 A:TRP53 4.4 0.0 1.0
N A:CYS58 4.5 0.0 1.0
HG2 A:PRO16 4.6 0.0 1.0
HB A:VAL19 4.6 0.0 1.0
N A:CYS55 4.6 0.0 1.0
CA A:CYS55 4.7 0.0 1.0
CA A:CYS17 4.8 0.0 1.0
H A:CYS55 4.8 0.0 1.0
H A:ARG18 4.8 0.0 1.0
C A:TRP53 4.8 0.0 1.0
C A:SER54 4.9 0.0 1.0
N A:CYS17 4.9 0.0 1.0
H A:CYS17 4.9 0.0 1.0
CG A:TRP53 4.9 0.0 1.0

Reference:

K.Miyamoto, A.Yamashita, K.Saito. Solution Structure of the Phd Finger From the Human KIAA1045 Protein Protein Sci. V. 27 987 2018.
ISSN: ESSN 1469-896X
PubMed: 29430827
DOI: 10.1002/PRO.3389
Page generated: Wed Dec 16 11:20:27 2020

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