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Zinc in PDB 5wam: Structure of Bame From Neisseria Gonorrhoeae

Protein crystallography data

The structure of Structure of Bame From Neisseria Gonorrhoeae, PDB code: 5wam was solved by K.V.Korotkov, S.K.Buchanan, N.Noinaj, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.18 / 2.45
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 62.804, 86.075, 49.919, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 24

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Bame From Neisseria Gonorrhoeae (pdb code 5wam). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of Bame From Neisseria Gonorrhoeae, PDB code: 5wam:

Zinc binding site 1 out of 1 in 5wam

Go back to Zinc Binding Sites List in 5wam
Zinc binding site 1 out of 1 in the Structure of Bame From Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Bame From Neisseria Gonorrhoeae within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn201

b:32.0
occ:1.00
OE2 B:GLU88 1.9 33.2 1.0
OD1 B:ASP107 2.3 34.3 1.0
OD2 B:ASP107 2.5 46.8 1.0
CG B:ASP107 2.7 33.9 1.0
CD B:GLU88 2.7 31.7 1.0
OE1 B:GLU88 2.9 36.5 1.0
HH22 A:ARG66 3.3 50.0 1.0
HH12 A:ARG66 3.5 28.6 1.0
HD22 B:ASN111 4.0 54.5 1.0
NH2 A:ARG66 4.1 41.7 1.0
CB B:ASP107 4.1 31.0 1.0
CG B:GLU88 4.1 29.4 1.0
NH1 A:ARG66 4.2 23.8 1.0
HB2 B:ASP107 4.3 37.2 1.0
HG3 B:GLU88 4.4 35.3 1.0
HG2 B:GLU88 4.4 35.3 1.0
HB3 B:ASP107 4.5 37.2 1.0
HG B:SER90 4.5 66.8 1.0
CZ A:ARG66 4.6 38.7 1.0
ND2 B:ASN111 4.6 45.4 1.0
HH21 A:ARG66 4.6 50.0 1.0
HB2 B:ASN111 4.8 45.8 1.0
HD21 B:ASN111 4.8 54.5 1.0
HH11 A:ARG66 4.8 28.6 1.0

Reference:

A.E.Sikora, I.H.Wierzbicki, R.A.Zielke, R.F.Ryner, K.V.Korotkov, S.K.Buchanan, N.Noinaj. Structural and Functional Insights Into the Role of Bamd and Bame Within the Beta-Barrel Assembly Machinery in Neisseria Gonorrhoeae. J. Biol. Chem. V. 293 1106 2018.
ISSN: ESSN 1083-351X
PubMed: 29229778
DOI: 10.1074/JBC.RA117.000437
Page generated: Wed Dec 16 11:15:43 2020

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