Zinc in PDB 5w3x: Crystal Structure of POPP2 in Complex with IP6, Accoa and the Wrky Domain of RRS1-R .

The structure of Crystal Structure of POPP2 in Complex with IP6, Accoa and the Wrky Domain of RRS1-R ., PDB code: 5w3x was solved by Z.M.Zhang, L.Gao, J.Song, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	82.81 / 2.00
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	45.539, 87.542, 87.548, 71.54, 84.04, 84.00
R / Rfree (%)	18.3 / 21.2

The binding sites of Zinc atom in the Crystal Structure of POPP2 in Complex with IP6, Accoa and the Wrky Domain of RRS1-R . (pdb code 5w3x). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of POPP2 in Complex with IP6, Accoa and the Wrky Domain of RRS1-R ., PDB code: 5w3x:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of POPP2 in Complex with IP6, Accoa and the Wrky Domain of RRS1-R .


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of POPP2 in Complex with IP6, Accoa and the Wrky Domain of RRS1-R . within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1301 b:54.4 occ:1.00 NE2 B:HIS1269 2.1 67.8 1.0 SG B:CYS1243 2.1 49.2 1.0 ND1 B:HIS1267 2.2 64.7 1.0 SG B:CYS1235 2.3 56.0 1.0 CE1 B:HIS1267 3.1 66.0 1.0 CD2 B:HIS1269 3.1 68.5 1.0 CB B:CYS1235 3.1 39.4 1.0 CE1 B:HIS1269 3.1 68.2 1.0 CB B:CYS1243 3.2 47.2 1.0 CG B:HIS1267 3.3 65.8 1.0 CB B:HIS1267 3.7 69.4 1.0 CA B:HIS1267 4.1 70.6 1.0 ND1 B:HIS1269 4.2 71.6 1.0 NE2 B:HIS1267 4.2 66.7 1.0 CG B:HIS1269 4.2 71.1 1.0 CB B:ALA1245 4.3 53.2 1.0 CD2 B:HIS1267 4.3 66.3 1.0 CA B:CYS1235 4.5 43.4 1.0 CB B:TYR1237 4.6 54.8 1.0 CD2 B:TYR1237 4.6 59.9 1.0 CA B:CYS1243 4.6 48.4 1.0 N B:ASN1268 4.8 72.4 1.0 CE3 B:TRP1213 4.9 72.5 1.0 OD1 B:ASN1268 5.0 79.3 1.0 N B:TYR1237 5.0 54.4 1.0 C B:HIS1267 5.0 70.8 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of POPP2 in Complex with IP6, Accoa and the Wrky Domain of RRS1-R .


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of POPP2 in Complex with IP6, Accoa and the Wrky Domain of RRS1-R . within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn1301 b:56.4 occ:1.00 ND1 D:HIS1267 2.1 66.4 1.0 SG D:CYS1243 2.2 49.0 1.0 NE2 D:HIS1269 2.2 65.3 1.0 SG D:CYS1235 2.3 50.7 1.0 CE1 D:HIS1267 2.9 67.5 1.0 CB D:CYS1235 3.0 39.7 1.0 CE1 D:HIS1269 3.1 68.4 1.0 CD2 D:HIS1269 3.1 67.4 1.0 CG D:HIS1267 3.2 68.8 1.0 CB D:CYS1243 3.2 50.4 1.0 CB D:HIS1267 3.7 66.9 1.0 NE2 D:HIS1267 4.0 67.5 1.0 CA D:HIS1267 4.1 68.1 1.0 CD2 D:HIS1267 4.2 69.3 1.0 CB D:ALA1245 4.2 53.5 1.0 ND1 D:HIS1269 4.2 70.6 1.0 CG D:HIS1269 4.3 67.8 1.0 O D:HOH1406 4.4 59.2 1.0 CA D:CYS1235 4.5 46.4 1.0 CB D:TYR1237 4.6 63.8 1.0 CA D:CYS1243 4.7 48.5 1.0 CD2 D:TYR1237 4.7 66.1 1.0 N D:ASN1268 4.8 70.6 1.0 CE3 D:TRP1213 4.9 76.4 1.0 N D:TYR1237 5.0 50.9 1.0 C D:HIS1267 5.0 70.4 1.0

Z.M.Zhang, K.W.Ma, L.Gao, Z.Hu, S.Schwizer, W.Ma, J.Song. Mechanism of Host Substrate Acetylation By A Yopj Family Effector. Nat Plants V. 3 17115 2017.
ISSN: ESSN 2055-0278
PubMed: 28737762
DOI: 10.1038/NPLANTS.2017.115