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Zinc in PDB 5w1t: X-Ray Crystal Structure of Escherichia Coli Rna Polymerase and Dksa Complex
Enzymatic activity of X-Ray Crystal Structure of Escherichia Coli Rna Polymerase and Dksa Complex
All present enzymatic activity of X-Ray Crystal Structure of Escherichia Coli Rna Polymerase and Dksa Complex:
2.7.7.6;
2.7.7.6;
Protein crystallography data
The structure of X-Ray Crystal Structure of Escherichia Coli Rna Polymerase and Dksa Complex, PDB code: 5w1t
was solved by
K.S.Murakami,
V.Molodtsov,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 47.08 / 4.50 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 184.000, 204.894, 314.312, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 22 / 27.6 |
Other elements in 5w1t:
The structure of X-Ray Crystal Structure of Escherichia Coli Rna Polymerase and Dksa Complex also contains other interesting chemical elements:
| Magnesium | (Mg) | 2 atoms |
Zinc Binding Sites:
The binding sites of Zinc atom in the X-Ray Crystal Structure of Escherichia Coli Rna Polymerase and Dksa Complex
(pdb code 5w1t). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the X-Ray Crystal Structure of Escherichia Coli Rna Polymerase and Dksa Complex, PDB code: 5w1t:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;
In total 6 binding sites of Zinc where determined in the X-Ray Crystal Structure of Escherichia Coli Rna Polymerase and Dksa Complex, PDB code: 5w1t:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;
Zinc binding site 1 out of 6 in 5w1t
Go back to
Zinc Binding Sites List in 5w1t
Zinc binding site 1 out
of 6 in the X-Ray Crystal Structure of Escherichia Coli Rna Polymerase and Dksa Complex
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of X-Ray Crystal Structure of Escherichia Coli Rna Polymerase and Dksa Complex within 5.0Å range:
|
Zinc binding site 2 out of 6 in 5w1t
Go back to
Zinc Binding Sites List in 5w1t
Zinc binding site 2 out
of 6 in the X-Ray Crystal Structure of Escherichia Coli Rna Polymerase and Dksa Complex
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of X-Ray Crystal Structure of Escherichia Coli Rna Polymerase and Dksa Complex within 5.0Å range:
|
Zinc binding site 3 out of 6 in 5w1t
Go back to
Zinc Binding Sites List in 5w1t
Zinc binding site 3 out
of 6 in the X-Ray Crystal Structure of Escherichia Coli Rna Polymerase and Dksa Complex
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of X-Ray Crystal Structure of Escherichia Coli Rna Polymerase and Dksa Complex within 5.0Å range:
|
Zinc binding site 4 out of 6 in 5w1t
Go back to
Zinc Binding Sites List in 5w1t
Zinc binding site 4 out
of 6 in the X-Ray Crystal Structure of Escherichia Coli Rna Polymerase and Dksa Complex
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of X-Ray Crystal Structure of Escherichia Coli Rna Polymerase and Dksa Complex within 5.0Å range:
|
Zinc binding site 5 out of 6 in 5w1t
Go back to
Zinc Binding Sites List in 5w1t
Zinc binding site 5 out
of 6 in the X-Ray Crystal Structure of Escherichia Coli Rna Polymerase and Dksa Complex
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of X-Ray Crystal Structure of Escherichia Coli Rna Polymerase and Dksa Complex within 5.0Å range:
|
Zinc binding site 6 out of 6 in 5w1t
Go back to
Zinc Binding Sites List in 5w1t
Zinc binding site 6 out
of 6 in the X-Ray Crystal Structure of Escherichia Coli Rna Polymerase and Dksa Complex
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of X-Ray Crystal Structure of Escherichia Coli Rna Polymerase and Dksa Complex within 5.0Å range:
|
Reference:
V.Molodtsov,
E.Sineva,
L.Zhang,
X.Huang,
M.Cashel,
S.E.Ades,
K.S.Murakami.
Allosteric Effector Ppgpp Potentiates the Inhibition of Transcript Initiation By Dksa. Mol. Cell V. 69 828 2018.
ISSN: ISSN 1097-4164
PubMed: 29478808
DOI: 10.1016/J.MOLCEL.2018.01.035
Page generated: Mon Oct 28 13:37:26 2024
ISSN: ISSN 1097-4164
PubMed: 29478808
DOI: 10.1016/J.MOLCEL.2018.01.035
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