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Zinc in PDB 5ufl: Crystal Structure of A CIP2A Core Domain

Protein crystallography data

The structure of Crystal Structure of A CIP2A Core Domain, PDB code: 5ufl was solved by Z.Wang, J.Wang, Z.Rao, W.Xu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 132.74 / 3.00
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 153.276, 153.276, 105.440, 90.00, 90.00, 120.00
R / Rfree (%) 25.6 / 28.1

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A CIP2A Core Domain (pdb code 5ufl). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of A CIP2A Core Domain, PDB code: 5ufl:

Zinc binding site 1 out of 1 in 5ufl

Go back to Zinc Binding Sites List in 5ufl
Zinc binding site 1 out of 1 in the Crystal Structure of A CIP2A Core Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A CIP2A Core Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn601

b:0.2
occ:1.00
SG A:CYS337 2.5 0.9 1.0
CB A:CYS337 2.8 0.1 1.0
ND1 A:HIS334 3.0 0.2 1.0
CE1 A:HIS334 3.8 0.8 1.0
CG A:HIS334 3.9 0.3 1.0
CA A:HIS334 4.0 0.8 1.0
CB A:HIS334 4.2 1.0 1.0
CA A:CYS337 4.4 0.7 1.0
O A:SER333 4.6 0.0 1.0
N A:HIS334 4.8 0.5 1.0
O A:HIS334 4.9 0.8 1.0
C A:CYS337 4.9 0.5 1.0
C A:HIS334 5.0 0.3 1.0
NE2 A:HIS334 5.0 0.8 1.0
O A:CYS337 5.0 0.6 1.0

Reference:

J.Wang, J.Okkeri, K.Pavic, Z.Wang, O.Kauko, T.Halonen, G.Sarek, P.M.Ojala, Z.Rao, W.Xu, J.Westermarck. Oncoprotein CIP2A Is Stabilized Via Interaction with Tumor Suppressor PP2A/B56. Embo Rep. V. 18 437 2017.
ISSN: ESSN 1469-3178
PubMed: 28174209
DOI: 10.15252/EMBR.201642788
Page generated: Mon Oct 28 09:30:42 2024

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