Zinc in PDB 5tzg: Structure of the Bldd Ctd(D116A)-(C-Di-Gmp)2, Form 2

The structure of Structure of the Bldd Ctd(D116A)-(C-Di-Gmp)2, Form 2, PDB code: 5tzg was solved by M.A.Schumacher, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.42 / 2.50
Space group	P 41 2 2
Cell size a, b, c (Å), α, β, γ (°)	82.098, 82.098, 59.118, 90.00, 90.00, 90.00
R / Rfree (%)	19.7 / 24.8

The binding sites of Zinc atom in the Structure of the Bldd Ctd(D116A)-(C-Di-Gmp)2, Form 2 (pdb code 5tzg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of the Bldd Ctd(D116A)-(C-Di-Gmp)2, Form 2, PDB code: 5tzg:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of the Bldd Ctd(D116A)-(C-Di-Gmp)2, Form 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Bldd Ctd(D116A)-(C-Di-Gmp)2, Form 2 within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn201 b:71.4 occ:0.53 OE2 C:GLU98 3.5 99.5 1.0 OE1 C:GLU98 3.5 93.1 1.0 CD C:GLU98 3.9 88.8 1.0

Zinc binding site 2 out of 2 in the Structure of the Bldd Ctd(D116A)-(C-Di-Gmp)2, Form 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the Bldd Ctd(D116A)-(C-Di-Gmp)2, Form 2 within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn202 b:0.6 occ:0.70 CE1 C:HIS94 2.3 77.9 1.0 NE2 C:HIS94 2.3 86.1 1.0 ND1 C:HIS94 3.5 79.0 1.0 CD2 C:HIS94 3.6 86.6 1.0 CG C:HIS94 4.2 79.2 1.0

M.A.Schumacher, W.Zeng, K.C.Findlay, M.J.Buttner, R.G.Brennan, N.Tschowri. The Streptomyces Master Regulator Bldd Binds C-Di-Gmp Sequentially to Create A Functional BLDD2-(C-Di-Gmp)4 Complex. Nucleic Acids Res. V. 45 6923 2017.
ISSN: ESSN 1362-4962
PubMed: 28449057
DOI: 10.1093/NAR/GKX287