Zinc in PDB 5txu: 1.95 Angstrom Resolution Crystal Structure of Stage II Sporulation Protein D (Spoiid) From Clostridium Difficile in Apo Conformation

The structure of 1.95 Angstrom Resolution Crystal Structure of Stage II Sporulation Protein D (Spoiid) From Clostridium Difficile in Apo Conformation, PDB code: 5txu was solved by S.Nocadello, G.Minasov, O.Kiryukhina, L.Shuvalova, W.F.Anderson, Centerfor Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.06 / 1.95
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	98.043, 98.043, 108.241, 90.00, 90.00, 120.00
R / Rfree (%)	15.9 / 18.4

The structure of 1.95 Angstrom Resolution Crystal Structure of Stage II Sporulation Protein D (Spoiid) From Clostridium Difficile in Apo Conformation also contains other interesting chemical elements:

Chlorine	(Cl)	2 atoms
Sodium	(Na)	2 atoms

The binding sites of Zinc atom in the 1.95 Angstrom Resolution Crystal Structure of Stage II Sporulation Protein D (Spoiid) From Clostridium Difficile in Apo Conformation (pdb code 5txu). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the 1.95 Angstrom Resolution Crystal Structure of Stage II Sporulation Protein D (Spoiid) From Clostridium Difficile in Apo Conformation, PDB code: 5txu:

Zinc binding site 1 out of 1 in the 1.95 Angstrom Resolution Crystal Structure of Stage II Sporulation Protein D (Spoiid) From Clostridium Difficile in Apo Conformation


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of 1.95 Angstrom Resolution Crystal Structure of Stage II Sporulation Protein D (Spoiid) From Clostridium Difficile in Apo Conformation within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:51.0 occ:1.00 SG A:CYS140 2.3 51.4 1.0 SG A:CYS146 2.4 48.9 1.0 NE2 A:HIS134 2.4 62.0 1.0 ND1 A:HIS145 2.5 63.0 1.0 CB A:CYS140 3.2 49.9 1.0 CB A:CYS146 3.3 47.2 1.0 CD2 A:HIS134 3.3 60.9 1.0 CE1 A:HIS145 3.3 61.8 1.0 CG A:HIS145 3.3 61.2 1.0 CE1 A:HIS134 3.3 59.9 1.0 N A:CYS140 3.4 46.3 1.0 CB A:HIS145 3.6 58.3 1.0 N A:CYS146 3.7 50.2 1.0 CA A:CYS140 3.9 47.1 1.0 C A:HIS145 4.0 54.3 1.0 CA A:CYS146 4.0 48.3 1.0 NE2 A:HIS145 4.4 65.1 1.0 C A:VAL139 4.4 46.8 1.0 CD2 A:HIS145 4.4 64.9 1.0 O A:HIS145 4.4 52.0 1.0 ND1 A:HIS134 4.4 57.6 1.0 CG A:HIS134 4.4 59.7 1.0 CA A:HIS145 4.5 56.5 1.0 C A:CYS140 4.5 45.4 1.0 O A:CYS140 4.6 41.3 1.0 CA A:VAL139 4.7 46.9 1.0 O A:ASP142 5.0 49.1 1.0

S.Nocadello, G.Minasov, O.Kiryukhina, L.Shuvalova, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 1.95 Angstrom Resolution Crystal Structure of Stage II Sporulation Protein D (Spoiid) From Clostridium Difficile in Apo Conformation To Be Published.