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Zinc in PDB 5no1: Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Magnesium and the Insti XZ407 (Compound 5G)

Enzymatic activity of Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Magnesium and the Insti XZ407 (Compound 5G)

All present enzymatic activity of Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Magnesium and the Insti XZ407 (Compound 5G):
2.7.7.49; 2.7.7.7; 3.1.26.4;

Protein crystallography data

The structure of Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Magnesium and the Insti XZ407 (Compound 5G), PDB code: 5no1 was solved by V.E.Pye, P.Cherepanov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.06 / 2.60
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 158.570, 158.570, 123.060, 90.00, 90.00, 90.00
R / Rfree (%) 17.7 / 20.4

Other elements in 5no1:

The structure of Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Magnesium and the Insti XZ407 (Compound 5G) also contains other interesting chemical elements:

Fluorine (F) 2 atoms
Magnesium (Mg) 3 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Magnesium and the Insti XZ407 (Compound 5G) (pdb code 5no1). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Magnesium and the Insti XZ407 (Compound 5G), PDB code: 5no1:

Zinc binding site 1 out of 1 in 5no1

Go back to Zinc Binding Sites List in 5no1
Zinc binding site 1 out of 1 in the Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Magnesium and the Insti XZ407 (Compound 5G)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Magnesium and the Insti XZ407 (Compound 5G) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn404

b:76.5
occ:1.00
 NE2 A:HIS62 2.0 68.8 1.0
ND1 A:HIS66 2.1 63.3 1.0
SG A:CYS96 2.2 79.3 1.0
SG A:CYS99 2.3 73.7 1.0
CE1 A:HIS62 2.8 62.5 1.0
CE1 A:HIS66 3.0 71.9 1.0
CD2 A:HIS62 3.1 63.3 1.0
CG A:HIS66 3.1 74.2 1.0
CB A:CYS99 3.3 67.8 1.0
CB A:CYS96 3.4 66.0 1.0
CB A:HIS66 3.5 62.0 1.0
N A:CYS99 3.8 68.4 1.0
CA A:HIS66 4.0 61.2 1.0
ND1 A:HIS62 4.0 61.9 1.0
CA A:CYS99 4.1 67.3 1.0
NE2 A:HIS66 4.1 75.9 1.0
CG A:HIS62 4.1 65.3 1.0
CD2 A:HIS66 4.2 62.7 1.0
O A:HIS66 4.5 65.5 1.0
C A:HIS66 4.5 69.0 1.0
CB A:GLN98 4.7 67.5 1.0
CA A:CYS96 4.7 77.7 1.0
C A:GLN98 4.7 69.8 1.0
OD1 A:ASN63 4.9 77.5 1.0

Reference:

X.Z.Zhao, S.J.Smith, D.P.Maskell, M.Metifiot, V.E.Pye, K.Fesen, C.Marchand, Y.Pommier, P.Cherepanov, S.H.Hughes, T.R.Burke. Structure-Guided Optimization of Hiv Integrase Strand Transfer Inhibitors. J. Med. Chem. V. 60 7315 2017.
ISSN: ISSN 1520-4804
PubMed: 28737946
DOI: 10.1021/ACS.JMEDCHEM.7B00596
Page generated: Sun Oct 27 22:59:17 2024

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