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Zinc in PDB 5ncn: Crystal Structure DBF2(Ntr)-MOB1 Complex

Enzymatic activity of Crystal Structure DBF2(Ntr)-MOB1 Complex

All present enzymatic activity of Crystal Structure DBF2(Ntr)-MOB1 Complex:
2.7.11.1;

Protein crystallography data

The structure of Crystal Structure DBF2(Ntr)-MOB1 Complex, PDB code: 5ncn was solved by G.Gogl, A.Remenyi, B.Parker, E.Weiss, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.42 / 3.50
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 108.620, 108.620, 135.210, 90.00, 90.00, 120.00
R / Rfree (%) 21.8 / 25.7

Other elements in 5ncn:

The structure of Crystal Structure DBF2(Ntr)-MOB1 Complex also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure DBF2(Ntr)-MOB1 Complex (pdb code 5ncn). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure DBF2(Ntr)-MOB1 Complex, PDB code: 5ncn:

Zinc binding site 1 out of 1 in 5ncn

Go back to Zinc Binding Sites List in 5ncn
Zinc binding site 1 out of 1 in the Crystal Structure DBF2(Ntr)-MOB1 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure DBF2(Ntr)-MOB1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:63.0
occ:1.00
NE2 A:HIS261 2.1 64.5 1.0
NE2 A:HIS266 2.1 76.7 1.0
SG A:CYS179 2.4 81.8 1.0
SG A:CYS184 2.5 78.7 1.0
CD2 A:HIS261 2.9 63.5 1.0
CE1 A:HIS266 3.0 78.5 1.0
CB A:CYS179 3.0 73.2 1.0
CE1 A:HIS261 3.2 66.6 1.0
CD2 A:HIS266 3.2 77.5 1.0
CB A:CYS184 3.4 74.4 1.0
CA A:CYS179 3.7 66.1 1.0
CB A:ALA210 3.9 63.3 1.0
CG A:HIS261 4.1 63.8 1.0
ND1 A:HIS266 4.2 78.9 1.0
ND1 A:HIS261 4.2 64.3 1.0
CG A:HIS266 4.3 77.3 1.0
C A:CYS179 4.6 66.9 1.0
OG1 A:THR183 4.7 71.9 1.0
CA A:CYS184 4.8 71.1 1.0
N A:CYS179 4.9 65.9 1.0
CB A:HIS265 4.9 57.7 1.0
N A:CYS184 5.0 66.7 1.0

Reference:

G.Gogl, A.Remenyi. Specificity of Yeast Ndr/Lats Kinases and Mob Co-Activators To Be Published.
Page generated: Sun Oct 27 22:44:21 2024

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