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Zinc in PDB 5m9z: Second Zinc-Binding Domain From Yeast PCF11

Zinc Binding Sites:

The binding sites of Zinc atom in the Second Zinc-Binding Domain From Yeast PCF11 (pdb code 5m9z). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Second Zinc-Binding Domain From Yeast PCF11, PDB code: 5m9z:

Zinc binding site 1 out of 1 in 5m9z

Go back to Zinc Binding Sites List in 5m9z
Zinc binding site 1 out of 1 in the Second Zinc-Binding Domain From Yeast PCF11


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Second Zinc-Binding Domain From Yeast PCF11 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn701

b:0.4
occ:1.00
OE2 A:GLU569 2.0 3.3 1.0
ND1 A:HIS596 2.2 0.4 1.0
SG A:CYS564 2.3 0.4 1.0
SG A:CYS599 2.4 0.8 1.0
SG A:CYS567 2.5 0.7 1.0
HB2 A:HIS596 2.8 0.5 1.0
CD A:GLU569 3.0 2.5 1.0
CG A:HIS596 3.2 0.4 1.0
CE1 A:HIS596 3.3 0.5 1.0
CB A:CYS564 3.4 0.3 1.0
HB2 A:CYS564 3.4 0.4 1.0
OE1 A:GLU569 3.4 3.1 1.0
CB A:HIS596 3.4 0.4 1.0
HB3 A:CYS564 3.5 0.3 1.0
HE1 A:HIS596 3.5 0.6 1.0
HB3 A:HIS596 3.7 0.5 1.0
H A:CYS567 3.9 0.4 1.0
CB A:CYS599 4.0 0.7 1.0
HB2 A:CYS599 4.1 0.7 1.0
CB A:CYS567 4.2 0.6 1.0
HG3 A:GLU569 4.2 1.7 1.0
CG A:GLU569 4.2 1.4 1.0
H A:GLU569 4.3 0.5 1.0
HB3 A:CYS599 4.3 0.7 1.0
CD2 A:HIS596 4.4 0.5 1.0
NE2 A:HIS596 4.4 0.6 1.0
HB A:ILE566 4.4 0.6 1.0
H A:HIS596 4.5 0.4 1.0
HB3 A:CYS567 4.5 0.7 1.0
N A:CYS567 4.6 0.4 1.0
HG21 A:VAL571 4.7 1.1 1.0
CA A:CYS564 4.8 0.3 1.0
H A:LYS568 4.8 0.4 1.0
HB2 A:GLU569 4.8 1.2 1.0
CA A:HIS596 4.8 0.3 1.0
CA A:CYS567 4.8 0.4 1.0
HB2 A:CYS567 4.9 0.6 1.0
H A:CYS599 4.9 0.4 1.0
HG2 A:GLU569 4.9 1.7 1.0

Reference:

J.Guegueniat, A.F.Dupin, J.Stojko, L.Beaurepaire, S.Cianferani, C.D.Mackereth, L.Minvielle-Sebastia, S.Fribourg. Distinct Roles of PCF11 Zinc-Binding Domains in Pre-Mrna 3'-End Processing. Nucleic Acids Res. V. 45 10115 2017.
ISSN: ESSN 1362-4962
PubMed: 28973460
DOI: 10.1093/NAR/GKX674
Page generated: Wed Dec 16 06:32:38 2020

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