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Zinc in PDB 5lve: Structure of the Variable Domain of Human Immunoglobulin K-4 Light Chain Len

Protein crystallography data

The structure of Structure of the Variable Domain of Human Immunoglobulin K-4 Light Chain Len, PDB code: 5lve was solved by M.Schiffer, D.-B.Huang, C.-H.Chang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.00
Space group P 62 2 2
Cell size a, b, c (Å), α, β, γ (°) 106.300, 106.300, 45.100, 90.00, 90.00, 120.00
R / Rfree (%) 18.6 / 21.8

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of the Variable Domain of Human Immunoglobulin K-4 Light Chain Len (pdb code 5lve). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of the Variable Domain of Human Immunoglobulin K-4 Light Chain Len, PDB code: 5lve:

Zinc binding site 1 out of 1 in 5lve

Go back to Zinc Binding Sites List in 5lve
Zinc binding site 1 out of 1 in the Structure of the Variable Domain of Human Immunoglobulin K-4 Light Chain Len


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Variable Domain of Human Immunoglobulin K-4 Light Chain Len within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn200

b:18.3
occ:0.50
OD1 A:ASP1 2.1 20.8 1.0
N A:ASP1 2.2 15.9 1.0
O A:ASP1 2.2 15.1 1.0
C A:ASP1 2.9 15.9 1.0
CA A:ASP1 2.9 16.6 1.0
CG A:ASP1 3.0 19.9 1.0
CB A:ASP1 3.5 18.8 1.0
OD2 A:ASP1 4.1 21.7 1.0
N A:ILE2 4.2 14.6 1.0
O A:HOH234 4.2 24.4 1.0
CG2 A:VAL3 4.5 14.1 1.0
CA A:ILE2 4.9 14.2 1.0
O A:HOH260 4.9 24.1 1.0

Reference:

P.R.Pokkuluri, X.Cai, G.Johnson, F.J.Stevens, M.Schiffer. Change in Dimerization Mode By Removal of A Single Unsatisfied Polar Residue Located at the Interface. Protein Sci. V. 9 1852 2000.
ISSN: ISSN 0961-8368
PubMed: 11045631
DOI: 10.1110/PS.9.9.1852
Page generated: Wed Dec 16 06:30:55 2020

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