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Zinc in PDB 5lps: Trna Guanine Transglycosylase (Tgt) in Co-Crystallized Complex (Space Group C2) with 6-Amino-2-(Methylamino)-4-(2-((2R,3R,4S,5R,6S)-3,4,5, 6-Tetramethoxytetrahydro-2H-Pyran-2-Yl)Ethyl)-1H-Imidazo[4,5- G]Quinazolin-8(7H)-One

Enzymatic activity of Trna Guanine Transglycosylase (Tgt) in Co-Crystallized Complex (Space Group C2) with 6-Amino-2-(Methylamino)-4-(2-((2R,3R,4S,5R,6S)-3,4,5, 6-Tetramethoxytetrahydro-2H-Pyran-2-Yl)Ethyl)-1H-Imidazo[4,5- G]Quinazolin-8(7H)-One

All present enzymatic activity of Trna Guanine Transglycosylase (Tgt) in Co-Crystallized Complex (Space Group C2) with 6-Amino-2-(Methylamino)-4-(2-((2R,3R,4S,5R,6S)-3,4,5, 6-Tetramethoxytetrahydro-2H-Pyran-2-Yl)Ethyl)-1H-Imidazo[4,5- G]Quinazolin-8(7H)-One:
2.4.2.29;

Protein crystallography data

The structure of Trna Guanine Transglycosylase (Tgt) in Co-Crystallized Complex (Space Group C2) with 6-Amino-2-(Methylamino)-4-(2-((2R,3R,4S,5R,6S)-3,4,5, 6-Tetramethoxytetrahydro-2H-Pyran-2-Yl)Ethyl)-1H-Imidazo[4,5- G]Quinazolin-8(7H)-One, PDB code: 5lps was solved by F.R.Ehrmann, A.Heine, G.Klebe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.37 / 1.27
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 84.951, 64.573, 71.001, 90.00, 93.62, 90.00
R / Rfree (%) 15 / 16.8

Zinc Binding Sites:

The binding sites of Zinc atom in the Trna Guanine Transglycosylase (Tgt) in Co-Crystallized Complex (Space Group C2) with 6-Amino-2-(Methylamino)-4-(2-((2R,3R,4S,5R,6S)-3,4,5, 6-Tetramethoxytetrahydro-2H-Pyran-2-Yl)Ethyl)-1H-Imidazo[4,5- G]Quinazolin-8(7H)-One (pdb code 5lps). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Trna Guanine Transglycosylase (Tgt) in Co-Crystallized Complex (Space Group C2) with 6-Amino-2-(Methylamino)-4-(2-((2R,3R,4S,5R,6S)-3,4,5, 6-Tetramethoxytetrahydro-2H-Pyran-2-Yl)Ethyl)-1H-Imidazo[4,5- G]Quinazolin-8(7H)-One, PDB code: 5lps:

Zinc binding site 1 out of 1 in 5lps

Go back to Zinc Binding Sites List in 5lps
Zinc binding site 1 out of 1 in the Trna Guanine Transglycosylase (Tgt) in Co-Crystallized Complex (Space Group C2) with 6-Amino-2-(Methylamino)-4-(2-((2R,3R,4S,5R,6S)-3,4,5, 6-Tetramethoxytetrahydro-2H-Pyran-2-Yl)Ethyl)-1H-Imidazo[4,5- G]Quinazolin-8(7H)-One


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Trna Guanine Transglycosylase (Tgt) in Co-Crystallized Complex (Space Group C2) with 6-Amino-2-(Methylamino)-4-(2-((2R,3R,4S,5R,6S)-3,4,5, 6-Tetramethoxytetrahydro-2H-Pyran-2-Yl)Ethyl)-1H-Imidazo[4,5- G]Quinazolin-8(7H)-One within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn403

b:23.6
occ:0.21
CB A:ASP315 2.1 32.9 0.8
ND1 A:HIS349 2.7 20.2 1.0
CA A:ASP315 3.0 32.4 0.8
CE1 A:HIS349 3.4 20.5 1.0
N A:ASP315 3.5 29.9 0.8
CG A:HIS349 3.8 17.5 1.0
CB A:HIS349 4.2 17.6 1.0
CA A:HIS349 4.4 17.3 1.0
C A:ASP315 4.4 34.4 0.8
C A:LEU314 4.4 27.7 0.8
NE2 A:HIS349 4.6 19.4 1.0
O A:HIS349 4.7 17.4 1.0
CD2 A:HIS349 4.8 17.7 1.0
O A:LEU314 4.8 27.7 0.8
NE2 A:GLN356 4.8 34.8 1.0

Reference:

F.R.Ehrmann, T.Botzanowski, T.Pfaffender, A.Heine, F.Diederich, S.Sanglier-Cianferani, G.Klebe. Carbohydrate-Based Inhibitors Targeting the Ribose-34 Pocket of Z.Mobilis Tgt and Changing the Oligomeric State of the Homodimer To Be Published.
Page generated: Wed Dec 16 06:30:27 2020

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