Zinc in PDB 5lmn: Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1A)

The structure of Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1A) also contains other interesting chemical elements:

Magnesium

(Mg)

127 atoms

The binding sites of Zinc atom in the Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1A) (pdb code 5lmn). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1A), PDB code: 5lmn:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1A)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1A) within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn300 b:5.4 occ:1.00 SG D:CYS26 1.6 42.3 1.0 SG D:CYS9 1.9 25.9 1.0 SG D:CYS31 2.1 57.1 1.0 SG D:CYS12 3.1 43.8 1.0 CB D:CYS31 3.3 64.5 1.0 CB D:CYS26 3.3 53.7 1.0 O D:CYS31 3.4 71.9 1.0 CA D:CYS31 3.5 69.2 1.0 CB D:CYS9 3.5 29.7 1.0 C D:CYS31 3.9 72.3 1.0 CA D:CYS26 3.9 61.6 1.0 CA D:CYS9 4.2 32.3 1.0 CB D:CYS12 4.3 43.9 1.0 CG D:LYS22 4.4 75.8 1.0 N D:TYR20 4.8 67.8 1.0 N D:CYS26 4.8 60.6 1.0 N D:CYS31 4.9 67.8 1.0 CB D:LYS22 4.9 76.0 1.0 N D:CYS9 5.0 32.0 1.0

Zinc binding site 2 out of 2 in the Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1A)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1A) within 5.0Å range: probe atom residue distance (Å) B Occ N:Zn1602 b:35.1 occ:0.92 SG N:CYS40 1.9 43.1 1.0 SG N:CYS43 2.4 40.5 1.0 SG N:CYS24 2.5 45.0 1.0 SG N:CYS27 2.5 46.4 1.0 CB N:CYS43 3.0 40.4 1.0 CB N:CYS24 3.1 45.1 1.0 CB N:CYS40 3.2 42.5 1.0 CB N:CYS27 3.4 50.6 1.0 N N:CYS27 3.8 53.4 1.0 N N:CYS40 3.9 41.7 1.0 N N:CYS43 4.1 39.5 1.0 CA N:CYS40 4.1 41.4 1.0 CA N:CYS43 4.1 39.6 1.0 CA N:CYS27 4.1 52.9 1.0 CB N:ARG29 4.2 50.4 1.0 N N:GLY28 4.4 51.7 1.0 N2 A:G1202 4.4 44.3 1.0 O2' A:G1202 4.5 50.0 1.0 N N:ARG29 4.5 54.6 1.0 CA N:CYS24 4.6 45.2 1.0 N3 A:G1202 4.6 42.2 1.0 O N:CYS40 4.6 39.9 1.0 C N:CYS40 4.6 39.6 1.0 CD N:ARG29 4.7 49.9 1.0 C N:CYS27 4.8 52.6 1.0 CG N:ARG29 5.0 49.5 1.0 C N:ARG26 5.0 54.0 1.0

T.Hussain, J.L.Llacer, B.T.Wimberly, J.S.Kieft, V.Ramakrishnan. Large-Scale Movements of IF3 and Trna During Bacterial Translation Initiation. Cell V. 167 133 2016.
ISSN: ISSN 1097-4172
PubMed: 27662086
DOI: 10.1016/J.CELL.2016.08.074