Atomistry » Zinc » PDB 5lc5-5llh » 5lla
Atomistry »
  Zinc »
    PDB 5lc5-5llh »
      5lla »

Zinc in PDB 5lla: Crystal Structure of Human Carbonic Anhydrase Isozyme XIII with 4-(1H- Benzimidazol-1-Ylacetyl)-2-Chlorobenzenesulfonamide

Enzymatic activity of Crystal Structure of Human Carbonic Anhydrase Isozyme XIII with 4-(1H- Benzimidazol-1-Ylacetyl)-2-Chlorobenzenesulfonamide

All present enzymatic activity of Crystal Structure of Human Carbonic Anhydrase Isozyme XIII with 4-(1H- Benzimidazol-1-Ylacetyl)-2-Chlorobenzenesulfonamide:
4.2.1.1;

Protein crystallography data

The structure of Crystal Structure of Human Carbonic Anhydrase Isozyme XIII with 4-(1H- Benzimidazol-1-Ylacetyl)-2-Chlorobenzenesulfonamide, PDB code: 5lla was solved by A.Smirnov, E.Manakova, S.Grazulis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 79.64 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 56.023, 57.276, 159.284, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 21.3

Other elements in 5lla:

The structure of Crystal Structure of Human Carbonic Anhydrase Isozyme XIII with 4-(1H- Benzimidazol-1-Ylacetyl)-2-Chlorobenzenesulfonamide also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Human Carbonic Anhydrase Isozyme XIII with 4-(1H- Benzimidazol-1-Ylacetyl)-2-Chlorobenzenesulfonamide (pdb code 5lla). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Human Carbonic Anhydrase Isozyme XIII with 4-(1H- Benzimidazol-1-Ylacetyl)-2-Chlorobenzenesulfonamide, PDB code: 5lla:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 5lla

Go back to Zinc Binding Sites List in 5lla
Zinc binding site 1 out of 2 in the Crystal Structure of Human Carbonic Anhydrase Isozyme XIII with 4-(1H- Benzimidazol-1-Ylacetyl)-2-Chlorobenzenesulfonamide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Human Carbonic Anhydrase Isozyme XIII with 4-(1H- Benzimidazol-1-Ylacetyl)-2-Chlorobenzenesulfonamide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn301

b:12.2
occ:1.00
N10 B:6YQ302 1.9 21.5 1.0
ND1 B:HIS121 2.0 10.2 1.0
NE2 B:HIS98 2.0 9.1 1.0
NE2 B:HIS96 2.0 15.2 1.0
O8 B:6YQ302 2.5 21.1 1.0
CD2 B:HIS96 3.0 11.3 1.0
CE1 B:HIS121 3.0 12.1 1.0
CG B:HIS121 3.0 8.9 1.0
CD2 B:HIS98 3.0 14.7 1.0
CE1 B:HIS98 3.0 12.6 1.0
S7 B:6YQ302 3.1 22.7 1.0
CE1 B:HIS96 3.1 12.5 1.0
CB B:HIS121 3.5 11.0 1.0
OG1 B:THR201 3.6 12.0 1.0
O9 B:6YQ302 4.1 25.7 1.0
NE2 B:HIS121 4.1 9.3 1.0
C1 B:6YQ302 4.2 25.0 1.0
ND1 B:HIS96 4.2 11.2 1.0
CG B:HIS96 4.2 10.5 1.0
OE1 B:GLU108 4.2 13.6 1.0
CD2 B:HIS121 4.2 9.3 1.0
ND1 B:HIS98 4.2 12.9 1.0
CG B:HIS98 4.2 11.8 1.0
C2 B:6YQ302 4.2 27.0 1.0
CB B:THR201 4.9 11.4 1.0
CA B:HIS121 4.9 10.5 1.0

Zinc binding site 2 out of 2 in 5lla

Go back to Zinc Binding Sites List in 5lla
Zinc binding site 2 out of 2 in the Crystal Structure of Human Carbonic Anhydrase Isozyme XIII with 4-(1H- Benzimidazol-1-Ylacetyl)-2-Chlorobenzenesulfonamide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Human Carbonic Anhydrase Isozyme XIII with 4-(1H- Benzimidazol-1-Ylacetyl)-2-Chlorobenzenesulfonamide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:11.4
occ:1.00
N10 A:6YQ302 1.8 19.4 1.0
NE2 A:HIS98 2.0 7.8 1.0
NE2 A:HIS96 2.0 10.5 1.0
ND1 A:HIS121 2.1 12.5 1.0
O8 A:6YQ302 2.7 18.1 1.0
CE1 A:HIS121 2.9 9.5 1.0
CE1 A:HIS98 2.9 10.2 1.0
S7 A:6YQ302 3.0 19.8 1.0
CD2 A:HIS96 3.0 11.0 1.0
CD2 A:HIS98 3.1 10.9 1.0
CE1 A:HIS96 3.1 10.8 1.0
CG A:HIS121 3.1 9.7 1.0
CB A:HIS121 3.5 9.9 1.0
OG1 A:THR201 3.7 10.6 1.0
O9 A:6YQ302 4.0 18.5 1.0
C1 A:6YQ302 4.0 21.1 1.0
C2 A:6YQ302 4.1 23.9 1.0
NE2 A:HIS121 4.1 9.2 1.0
OE1 A:GLU108 4.1 13.0 1.0
ND1 A:HIS98 4.1 10.6 1.0
CG A:HIS98 4.2 11.8 1.0
CG A:HIS96 4.2 10.6 1.0
ND1 A:HIS96 4.2 11.6 1.0
CD2 A:HIS121 4.2 9.4 1.0
CA A:HIS121 5.0 10.6 1.0

Reference:

E.Capkauskaite, V.Linkuviene, A.Smirnov, G.Milinaviciute, D.Timm, A.Kasiliauskaite, E.Manakova, S.Grazulis, D.Matulis. Combinatorial Design of Isoform-Selective N-Alkylated Benzimidazole-Based Inhibitors of Carbonic Anhydrases Chemistryselect 2017.
ISSN: ESSN 2365-6549
DOI: 10.1002/SLCT.201700531
Page generated: Sun Oct 27 21:07:31 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy