Atomistry » Zinc » PDB 5lc5-5llh » 5lcl
Atomistry »
  Zinc »
    PDB 5lc5-5llh »
      5lcl »

Zinc in PDB 5lcl: Structure of the RAD14 Dna-Binding Domain in Complex with C8- Aminofluorene- Guanine Containing Dna

Protein crystallography data

The structure of Structure of the RAD14 Dna-Binding Domain in Complex with C8- Aminofluorene- Guanine Containing Dna, PDB code: 5lcl was solved by S.Schneider, T.Carell, C.Ebert, N.Simon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.30 / 2.20
Space group P 41
Cell size a, b, c (Å), α, β, γ (°) 53.205, 53.205, 130.965, 90.00, 90.00, 90.00
R / Rfree (%) 21.7 / 25.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of the RAD14 Dna-Binding Domain in Complex with C8- Aminofluorene- Guanine Containing Dna (pdb code 5lcl). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of the RAD14 Dna-Binding Domain in Complex with C8- Aminofluorene- Guanine Containing Dna, PDB code: 5lcl:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 5lcl

Go back to Zinc Binding Sites List in 5lcl
Zinc binding site 1 out of 2 in the Structure of the RAD14 Dna-Binding Domain in Complex with C8- Aminofluorene- Guanine Containing Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the RAD14 Dna-Binding Domain in Complex with C8- Aminofluorene- Guanine Containing Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:24.5
occ:1.00
SG A:CYS216 2.3 26.8 1.0
SG A:CYS213 2.3 23.4 1.0
SG A:CYS194 2.4 25.5 1.0
SG A:CYS191 2.4 24.6 1.0
CB A:CYS191 3.1 25.7 1.0
CB A:CYS216 3.2 24.9 1.0
CB A:CYS194 3.3 28.1 1.0
CB A:CYS213 3.5 24.2 1.0
N A:CYS194 3.6 30.8 1.0
N A:CYS213 4.0 23.8 1.0
CA A:CYS194 4.0 30.4 1.0
CA A:CYS213 4.2 23.5 1.0
CA A:CYS216 4.4 25.3 1.0
N A:CYS216 4.4 24.2 1.0
CB A:ASN197 4.5 25.2 1.0
CB A:GLU193 4.5 30.2 1.0
CA A:CYS191 4.5 26.8 1.0
ND2 A:ASN197 4.5 24.9 1.0
C A:GLU193 4.7 31.4 1.0
O A:CYS213 4.8 22.5 1.0
N A:GLU193 4.9 30.0 1.0
C A:CYS213 4.9 23.7 1.0
C A:CYS191 4.9 28.5 1.0
N A:ASN197 4.9 27.7 1.0
C A:CYS194 5.0 32.7 1.0
CA A:GLU193 5.0 30.8 1.0

Zinc binding site 2 out of 2 in 5lcl

Go back to Zinc Binding Sites List in 5lcl
Zinc binding site 2 out of 2 in the Structure of the RAD14 Dna-Binding Domain in Complex with C8- Aminofluorene- Guanine Containing Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the RAD14 Dna-Binding Domain in Complex with C8- Aminofluorene- Guanine Containing Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn401

b:24.3
occ:1.00
SG B:CYS216 2.3 26.5 1.0
SG B:CYS191 2.3 24.3 1.0
SG B:CYS213 2.3 24.3 1.0
SG B:CYS194 2.4 26.6 1.0
CB B:CYS191 3.1 25.6 1.0
CB B:CYS216 3.2 25.5 1.0
CB B:CYS194 3.3 28.6 1.0
CB B:CYS213 3.5 25.2 1.0
N B:CYS194 3.6 30.5 1.0
CA B:CYS194 4.0 30.6 1.0
N B:CYS213 4.0 24.8 1.0
N B:CYS216 4.3 24.8 1.0
CA B:CYS213 4.3 24.6 1.0
CA B:CYS216 4.3 25.3 1.0
CB B:GLU193 4.5 29.9 1.0
ND2 B:ASN197 4.5 25.1 1.0
CB B:ASN197 4.5 25.3 1.0
CA B:CYS191 4.6 26.5 1.0
C B:GLU193 4.7 31.4 1.0
O B:CYS213 4.7 23.0 1.0
N B:GLU193 4.8 30.0 1.0
C B:CYS213 4.9 24.4 1.0
CA B:GLU193 4.9 30.8 1.0
C B:CYS194 4.9 32.4 1.0
N B:ASN197 5.0 27.8 1.0
C B:CYS191 5.0 27.9 1.0
N B:HIS195 5.0 32.4 1.0

Reference:

C.Ebert, N.Simon, S.Schneider, T.Carell. Structural Insights Into the Recognition of N(2) -Aryl- and C8-Aryl Dna Lesions By the Repair Protein Xpa/RAD14. Chembiochem V. 18 1379 2017.
ISSN: ESSN 1439-7633
PubMed: 28444956
DOI: 10.1002/CBIC.201700169
Page generated: Sun Oct 27 20:57:10 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy