Zinc in PDB 5l7j: Crystal Structure of ELP3 From Dehalococcoides Mccartyi

The structure of Crystal Structure of ELP3 From Dehalococcoides Mccartyi, PDB code: 5l7j was solved by S.Glatt, C.W.Mueller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.29 / 2.15
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	75.460, 158.580, 93.580, 90.00, 90.00, 90.00
R / Rfree (%)	19.1 / 21.9

The structure of Crystal Structure of ELP3 From Dehalococcoides Mccartyi also contains other interesting chemical elements:

Iron

(Fe)

2 atoms

The binding sites of Zinc atom in the Crystal Structure of ELP3 From Dehalococcoides Mccartyi (pdb code 5l7j). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of ELP3 From Dehalococcoides Mccartyi, PDB code: 5l7j:

Zinc binding site 1 out of 1 in the Crystal Structure of ELP3 From Dehalococcoides Mccartyi


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of ELP3 From Dehalococcoides Mccartyi within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:0.1 occ:1.00 SG A:CYS310 2.3 0.8 1.0 SG A:CYS312 2.3 0.1 1.0 SG A:CYS315 2.3 0.0 1.0 CB A:CYS310 3.3 0.1 1.0 CB A:CYS315 3.3 1.0 1.0 CB A:CYS312 3.7 81.8 1.0 N A:CYS315 3.7 0.7 1.0 CA A:CYS315 4.1 0.3 1.0 CB A:ILE275 4.2 86.8 1.0 CB A:ARG314 4.3 0.1 1.0 N A:CYS312 4.4 1.0 1.0 O A:ILE275 4.4 98.4 1.0 C A:ARG314 4.4 0.4 1.0 CA A:CYS312 4.5 90.2 1.0 CA A:CYS310 4.6 0.6 1.0 CD1 A:ILE275 4.6 93.7 1.0 CG1 A:ILE275 4.7 87.2 1.0 C A:CYS310 4.7 0.1 1.0 CA A:ARG314 4.7 0.3 1.0 N A:ARG314 4.7 0.0 1.0 O A:CYS310 4.8 0.0 1.0 CD A:LYS266 4.8 96.3 1.0 C A:CYS312 4.9 94.5 1.0 NZ A:LYS266 4.9 99.8 1.0 CE A:LYS266 4.9 95.9 1.0 CD A:ARG314 4.9 0.7 1.0 N A:ILE275 5.0 77.8 1.0 CG A:ARG314 5.0 0.5 1.0 CA A:ILE275 5.0 78.2 1.0

S.Glatt, R.Zabel, O.Kolaj-Robin, O.F.Onuma, F.Baudin, A.Graziadei, V.Taverniti, T.Y.Lin, F.Baymann, B.Seraphin, K.D.Breunig, C.W.Muller. Structural Basis For Trna Modification By ELP3 From Dehalococcoides Mccartyi. Nat.Struct.Mol.Biol. V. 23 794 2016.
ISSN: ESSN 1545-9985
PubMed: 27455459
DOI: 10.1038/NSMB.3265