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Zinc in PDB 5kci: Crystal Structure of HTC1

Protein crystallography data

The structure of Crystal Structure of HTC1, PDB code: 5kci was solved by R.M.Martin, S.Horowitz, B.Koepnick, S.Cooper, J.Flatten, D.S.Rogawski, N.M.Koropatkin, F.R.M.Beinlich, F.Players, U.M.Students, Z.Popovic, D.Baker, F.Khatib, J.C.A.Bardwell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.81 / 1.83
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 62.460, 62.460, 117.580, 90.00, 90.00, 90.00
R / Rfree (%) 20.1 / 25.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of HTC1 (pdb code 5kci). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of HTC1, PDB code: 5kci:

Zinc binding site 1 out of 1 in 5kci

Go back to Zinc Binding Sites List in 5kci
Zinc binding site 1 out of 1 in the Crystal Structure of HTC1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of HTC1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:87.0
occ:0.75
O A:HOH369 2.0 64.7 1.0
O A:HOH325 2.3 77.5 1.0
O A:HOH391 2.8 38.0 1.0
HH12 A:ARG90 3.2 60.4 1.0
O A:HOH355 3.4 38.6 1.0
HA A:ALA88 3.6 34.2 1.0
HB2 A:ALA88 3.7 33.0 1.0
HB1 A:ALA88 3.7 33.0 1.0
HH22 A:ARG90 3.7 64.7 1.0
O A:HOH388 3.8 59.4 1.0
O A:HOH326 4.0 68.3 1.0
CB A:ALA88 4.0 27.5 1.0
NH1 A:ARG90 4.1 50.3 1.0
O A:TYR87 4.3 33.1 1.0
CA A:ALA88 4.3 28.5 1.0
NH2 A:ARG90 4.5 53.9 1.0
H A:VAL89 4.5 34.1 1.0
O A:HOH307 4.6 54.2 1.0
HH11 A:ARG90 4.6 60.4 1.0
O A:HOH384 4.7 34.5 1.0
CZ A:ARG90 4.8 50.4 1.0
HB3 A:ALA88 4.9 33.0 1.0

Reference:

S.Horowitz, B.Koepnick, R.Martin, A.Tymieniecki, A.A.Winburn, S.Cooper, J.Flatten, D.S.Rogawski, N.M.Koropatkin, T.T.Hailu, N.Jain, P.Koldewey, L.S.Ahlstrom, M.R.Chapman, A.P.Sikkema, M.A.Skiba, F.P.Maloney, F.R.Beinlich, Z.Popovic, D.Baker, F.Khatib, J.C.Bardwell. Determining Crystal Structures Through Crowdsourcing and Coursework. Nat Commun V. 7 12549 2016.
ISSN: ESSN 2041-1723
PubMed: 27633552
DOI: 10.1038/NCOMMS12549
Page generated: Wed Dec 16 06:26:58 2020

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