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Zinc in PDB 5joh: Crystal Structure of CSN5(2-257) in Complex with CNS5I-1B

Protein crystallography data

The structure of Crystal Structure of CSN5(2-257) in Complex with CNS5I-1B, PDB code: 5joh was solved by M.Renatus, C.Wiesmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 57.01 / 1.99
Space group I 4
Cell size a, b, c (Å), α, β, γ (°) 102.058, 102.058, 68.729, 90.00, 90.00, 90.00
R / Rfree (%) 22.6 / 24.8

Other elements in 5joh:

The structure of Crystal Structure of CSN5(2-257) in Complex with CNS5I-1B also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of CSN5(2-257) in Complex with CNS5I-1B (pdb code 5joh). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of CSN5(2-257) in Complex with CNS5I-1B, PDB code: 5joh:

Zinc binding site 1 out of 1 in 5joh

Go back to Zinc Binding Sites List in 5joh
Zinc binding site 1 out of 1 in the Crystal Structure of CSN5(2-257) in Complex with CNS5I-1B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of CSN5(2-257) in Complex with CNS5I-1B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:46.9
occ:1.00
N4 A:6M3302 1.9 37.3 1.0
OD2 A:ASP151 2.0 52.6 1.0
NE2 A:HIS140 2.0 49.5 1.0
NE2 A:HIS138 2.2 49.2 1.0
CG A:ASP151 2.7 45.0 1.0
OD1 A:ASP151 2.8 45.1 1.0
C5 A:6M3302 2.9 38.9 1.0
C3 A:6M3302 2.9 45.8 1.0
CD2 A:HIS140 3.0 49.6 1.0
CE1 A:HIS140 3.0 48.7 1.0
CD2 A:HIS138 3.1 49.5 1.0
CE1 A:HIS138 3.2 48.7 1.0
C1 A:6M3302 4.0 42.6 1.0
N2 A:6M3302 4.0 43.4 1.0
OG A:SER148 4.1 53.8 1.0
CG A:HIS140 4.1 47.6 1.0
ND1 A:HIS140 4.2 48.6 1.0
CB A:ASP151 4.2 50.7 1.0
CG A:HIS138 4.3 46.8 1.0
ND1 A:HIS138 4.3 49.0 1.0
N A:SER148 4.4 49.2 1.0
CB A:SER148 4.4 52.0 1.0
O A:TRP146 4.6 44.7 1.0

Reference:

A.Schlierf, E.Altmann, J.Quancard, A.B.Jefferson, R.Assenberg, M.Renatus, M.Jones, U.Hassiepen, M.Schaefer, M.Kiffe, A.Weiss, C.Wiesmann, R.Sedrani, J.Eder, B.Martoglio. Targeted Inhibition of the COP9 Signalosome For Treatment of Cancer. Nat Commun V. 7 13166 2016.
ISSN: ESSN 2041-1723
PubMed: 27774986
DOI: 10.1038/NCOMMS13166
Page generated: Sun Oct 27 19:11:25 2024

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