Zinc in PDB 5jmu: The Crystal Structure of the Catalytic Domain of Peptidoglycan N- Acetylglucosamine Deacetylase From Eubacterium Rectale Atcc 33656

The structure of The Crystal Structure of the Catalytic Domain of Peptidoglycan N- Acetylglucosamine Deacetylase From Eubacterium Rectale Atcc 33656, PDB code: 5jmu was solved by K.Tan, M.Gu, S.Clancy, A.Joachimiak, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.42 / 1.54
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	46.495, 60.323, 79.577, 90.00, 90.00, 90.00
R / Rfree (%)	15.5 / 18.9

The structure of The Crystal Structure of the Catalytic Domain of Peptidoglycan N- Acetylglucosamine Deacetylase From Eubacterium Rectale Atcc 33656 also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Zinc atom in the The Crystal Structure of the Catalytic Domain of Peptidoglycan N- Acetylglucosamine Deacetylase From Eubacterium Rectale Atcc 33656 (pdb code 5jmu). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Crystal Structure of the Catalytic Domain of Peptidoglycan N- Acetylglucosamine Deacetylase From Eubacterium Rectale Atcc 33656, PDB code: 5jmu:

Zinc binding site 1 out of 1 in the The Crystal Structure of the Catalytic Domain of Peptidoglycan N- Acetylglucosamine Deacetylase From Eubacterium Rectale Atcc 33656


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of the Catalytic Domain of Peptidoglycan N- Acetylglucosamine Deacetylase From Eubacterium Rectale Atcc 33656 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn502 b:13.5 occ:0.80 O A:HOH618 2.1 11.7 1.0 NE2 A:HIS346 2.1 10.9 1.0 O A:HOH640 2.1 12.4 1.0 OD1 A:ASP298 2.1 12.2 1.0 O A:HOH700 2.2 12.8 1.0 NE2 A:HIS350 2.2 16.0 1.0 CD2 A:HIS346 3.0 12.8 1.0 CE1 A:HIS350 3.1 27.6 1.0 CG A:ASP298 3.1 11.8 1.0 CE1 A:HIS346 3.2 10.4 1.0 CD2 A:HIS350 3.2 13.8 1.0 OD2 A:ASP298 3.4 14.9 1.0 OD2 A:ASP297 4.1 14.7 1.0 O A:HOH769 4.1 27.2 1.0 CG A:HIS346 4.2 11.7 1.0 ND1 A:HIS350 4.2 29.7 1.0 ND1 A:HIS346 4.2 10.8 1.0 CB A:ASP297 4.3 10.3 1.0 CG A:HIS350 4.3 17.7 1.0 NE2 A:HIS456 4.4 17.9 1.0 OH A:TYR352 4.4 24.6 1.0 CB A:ASP298 4.5 11.6 1.0 O A:HOH737 4.5 28.0 1.0 CD2 A:HIS456 4.6 19.1 1.0 CG A:ASP297 4.6 12.1 1.0 CA A:ASP298 4.9 10.4 1.0 N A:ASP298 4.9 10.9 1.0 CA A:PRO387 4.9 13.4 1.0

K.Tan, M.Gu, S.Clancy, A.Joachimiak. The Crystal Structure of the Catalytic Domain of Peptidoglycan N-Acetylglucosamine Deacetylase From Eubacterium Rectale Atcc 33656 (Casp Target) To Be Published.