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Zinc in PDB 5j6p: Crystal Structure of MIS18(17-118) From Schizosaccharomyces Pombe

Protein crystallography data

The structure of Crystal Structure of MIS18(17-118) From Schizosaccharomyces Pombe, PDB code: 5j6p was solved by C.Wang, C.Shao, M.Zhang, X.Zhang, J.Zang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.66 / 2.60
Space group P 31 1 2
Cell size a, b, c (Å), α, β, γ (°) 120.568, 120.568, 73.702, 90.00, 90.00, 120.00
R / Rfree (%) 22.5 / 29.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of MIS18(17-118) From Schizosaccharomyces Pombe (pdb code 5j6p). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Crystal Structure of MIS18(17-118) From Schizosaccharomyces Pombe, PDB code: 5j6p:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 5j6p

Go back to Zinc Binding Sites List in 5j6p
Zinc binding site 1 out of 3 in the Crystal Structure of MIS18(17-118) From Schizosaccharomyces Pombe


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of MIS18(17-118) From Schizosaccharomyces Pombe within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn201

b:20.0
occ:1.00
SG B:CYS82 2.2 57.6 1.0
SG B:CYS79 2.2 57.2 1.0
SG B:CYS25 2.3 56.6 1.0
SG B:CYS28 2.7 60.1 1.0
CB B:CYS82 2.8 64.6 1.0
CB B:CYS79 3.0 71.2 1.0
CB B:CYS25 3.1 59.3 1.0
CB B:CYS28 3.6 57.0 1.0
N B:CYS82 3.6 68.0 1.0
CA B:CYS82 3.7 67.1 1.0
N B:CYS28 3.9 61.1 1.0
CA B:CYS28 4.3 54.9 1.0
CB B:LYS27 4.4 71.4 1.0
C B:CYS82 4.5 63.7 1.0
CA B:CYS79 4.5 67.2 1.0
CA B:CYS25 4.6 64.2 1.0
O B:CYS79 4.6 71.8 1.0
O B:CYS25 4.8 71.2 1.0
C B:ARG81 4.8 67.4 1.0
C B:LYS27 4.8 67.8 1.0
C B:CYS79 4.8 66.5 1.0
CB B:GLU84 4.9 70.0 1.0
CB B:ARG81 4.9 74.3 1.0
C B:CYS25 4.9 64.9 1.0
N B:ASN83 4.9 68.6 1.0
CB B:GLN30 5.0 63.9 1.0
N B:LYS27 5.0 64.7 1.0

Zinc binding site 2 out of 3 in 5j6p

Go back to Zinc Binding Sites List in 5j6p
Zinc binding site 2 out of 3 in the Crystal Structure of MIS18(17-118) From Schizosaccharomyces Pombe


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of MIS18(17-118) From Schizosaccharomyces Pombe within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:20.0
occ:1.00
SG A:CYS82 2.0 49.6 1.0
SG A:CYS79 2.3 56.4 1.0
SG A:CYS28 2.3 57.1 1.0
SG A:CYS25 2.5 56.6 1.0
CB A:CYS82 3.1 50.8 1.0
CB A:CYS79 3.2 69.9 1.0
CB A:CYS25 3.2 64.4 1.0
CB A:CYS28 3.6 59.1 1.0
N A:CYS82 3.6 56.5 1.0
N A:CYS28 3.9 54.7 1.0
CA A:CYS82 3.9 56.2 1.0
CA A:CYS28 4.3 64.9 1.0
CB A:LYS27 4.4 76.5 1.0
CA A:CYS25 4.6 64.3 1.0
CA A:CYS79 4.6 61.4 1.0
C A:CYS82 4.6 57.1 1.0
CB A:ARG81 4.6 68.5 1.0
C A:ARG81 4.7 62.8 1.0
N A:ASN83 4.8 63.5 1.0
O A:CYS79 4.9 66.8 1.0
C A:CYS79 4.9 63.3 1.0
C A:LYS27 4.9 69.4 1.0
CB A:GLU84 5.0 64.6 1.0

Zinc binding site 3 out of 3 in 5j6p

Go back to Zinc Binding Sites List in 5j6p
Zinc binding site 3 out of 3 in the Crystal Structure of MIS18(17-118) From Schizosaccharomyces Pombe


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of MIS18(17-118) From Schizosaccharomyces Pombe within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn201

b:20.0
occ:1.00
SG C:CYS79 2.1 92.0 1.0
SG C:CYS28 2.3 94.7 1.0
SG C:CYS25 2.5 80.8 1.0
SG C:CYS82 2.8 85.0 1.0
CB C:CYS79 2.9 97.0 1.0
N C:CYS82 3.0 93.5 1.0
CB C:CYS82 3.1 93.3 1.0
CB C:CYS25 3.1 84.8 1.0
CB C:CYS28 3.3 85.1 1.0
CA C:CYS82 3.5 94.3 1.0
CB C:ARG81 3.8 0.5 1.0
C C:ARG81 4.1 0.0 1.0
N C:CYS28 4.1 97.6 1.0
CA C:CYS28 4.3 85.6 1.0
CA C:CYS79 4.3 89.6 1.0
CA C:ARG81 4.4 0.9 1.0
C C:CYS82 4.5 97.9 1.0
N C:ARG81 4.5 0.9 1.0
N C:ASN83 4.5 98.5 1.0
CA C:CYS25 4.6 81.7 1.0
C C:CYS79 4.7 0.6 1.0
OE1 C:GLN30 4.7 0.5 1.0
O C:CYS79 4.7 0.1 1.0
CB C:GLN30 4.8 91.0 1.0
N C:GLU84 5.0 0.8 1.0

Reference:

C.Shao, C.Wang, M.Zhang, X.Zhang, J.Zang. Crystal Structure of MIS18(17-118) From Schizosaccharomyces Pombe To Be Published.
Page generated: Wed Dec 16 06:24:29 2020

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