Zinc in PDB 5iye: Comparison of X-Ray Crystal Structures of A Tetradecamer Sequence D(Cccgggtacccggg)2 at 1.7 Resolution

The structure of Comparison of X-Ray Crystal Structures of A Tetradecamer Sequence D(Cccgggtacccggg)2 at 1.7 Resolution, PDB code: 5iye was solved by S.Karthik, A.Thirugnanasambandam, P.K.Mandal, N.Gautham, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.79 / 1.69
Space group	P 41
Cell size a, b, c (Å), α, β, γ (°)	29.283, 29.283, 88.213, 90.00, 90.00, 90.00
R / Rfree (%)	18.8 / 22

The binding sites of Zinc atom in the Comparison of X-Ray Crystal Structures of A Tetradecamer Sequence D(Cccgggtacccggg)2 at 1.7 Resolution (pdb code 5iye). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Comparison of X-Ray Crystal Structures of A Tetradecamer Sequence D(Cccgggtacccggg)2 at 1.7 Resolution, PDB code: 5iye:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Comparison of X-Ray Crystal Structures of A Tetradecamer Sequence D(Cccgggtacccggg)2 at 1.7 Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Comparison of X-Ray Crystal Structures of A Tetradecamer Sequence D(Cccgggtacccggg)2 at 1.7 Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn101 b:58.7 occ:0.30 O A:HOH214 1.9 58.2 1.0 N7 A:DG13 2.6 32.7 1.0 C8 A:DG13 3.4 32.4 1.0 C5 A:DG13 3.7 31.4 1.0 O6 A:DG13 3.9 34.5 1.0 OP2 A:DG13 4.0 41.7 1.0 O A:HOH202 4.1 37.8 1.0 C6 A:DG13 4.2 32.9 1.0 N7 A:DG12 4.6 34.0 1.0 N9 A:DG13 4.6 32.8 1.0 C5 A:DG12 4.6 33.0 1.0 C4 A:DG13 4.8 31.4 1.0 C6 A:DG12 4.9 33.6 1.0 N7 A:DG14 4.9 33.4 1.0 O6 A:DG12 5.0 34.7 1.0 C8 A:DG12 5.0 32.7 1.0

Zinc binding site 2 out of 2 in the Comparison of X-Ray Crystal Structures of A Tetradecamer Sequence D(Cccgggtacccggg)2 at 1.7 Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Comparison of X-Ray Crystal Structures of A Tetradecamer Sequence D(Cccgggtacccggg)2 at 1.7 Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn101 b:75.8 occ:0.59 O B:HOH213 2.5 52.2 1.0 N7 B:DG13 2.7 34.2 1.0 O B:HOH210 2.8 47.9 1.0 O B:HOH207 3.0 47.9 1.0 O6 B:DG13 3.2 33.9 1.0 C5 B:DG13 3.5 33.2 1.0 C6 B:DG13 3.7 33.5 1.0 C8 B:DG13 3.8 34.4 1.0 N7 B:DG14 4.6 33.7 1.0 O6 B:DG12 4.7 34.6 1.0 C4 B:DG13 4.8 32.5 1.0 C6 B:DG12 4.8 32.9 1.0 C5 B:DG12 4.9 32.9 1.0 OP2 B:DG13 4.9 46.9 1.0 N7 B:DG12 4.9 32.7 1.0 N9 B:DG13 4.9 34.2 1.0

S.Karthik, A.Thirugnanasambandam, P.K.Mandal, N.Gautham. Comparison of X-Ray Crystal Structures of A Tetradecamer Sequence D(Cccgggtacccggg)2 at 1.7 Angstrom Resolution. Nucleosides Nucleotides V. 36 343 2017NUCLEIC Acids.
ISSN: ISSN 1532-2335
PubMed: 28387634
DOI: 10.1080/15257770.2017.1287378