Atomistry » Zinc » PDB 5hmy-5i1r » 5hvq
Atomistry »
  Zinc »
    PDB 5hmy-5i1r »
      5hvq »

Zinc in PDB 5hvq: Alternative Model of the Mage-G1 Nse-1 Complex

Protein crystallography data

The structure of Alternative Model of the Mage-G1 Nse-1 Complex, PDB code: 5hvq was solved by J.A.Newman, C.D.O.Cooper, A.K.Roos, H.Aitkenhead, U.C.T.Oppermann, H.J.Cho, R.Osman, O.Gileadi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.36 / 2.92
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 83.257, 154.327, 53.726, 90.00, 90.00, 90.00
R / Rfree (%) 23.7 / 26.8

Zinc Binding Sites:

The binding sites of Zinc atom in the Alternative Model of the Mage-G1 Nse-1 Complex (pdb code 5hvq). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Alternative Model of the Mage-G1 Nse-1 Complex, PDB code: 5hvq:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 5hvq

Go back to Zinc Binding Sites List in 5hvq
Zinc binding site 1 out of 2 in the Alternative Model of the Mage-G1 Nse-1 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Alternative Model of the Mage-G1 Nse-1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn301

b:50.5
occ:1.00
SG C:CYS194 2.3 63.5 1.0
SG C:CYS215 2.3 59.0 1.0
ND1 C:HIS212 2.3 50.8 1.0
SG C:CYS191 2.3 61.6 1.0
CB C:CYS191 2.8 55.8 1.0
CG C:HIS212 3.1 44.0 1.0
CB C:HIS212 3.3 50.8 1.0
CE1 C:HIS212 3.3 66.7 1.0
CB C:CYS194 3.4 68.7 1.0
CB C:CYS215 3.4 59.5 1.0
N C:CYS194 3.8 71.3 1.0
N C:HIS212 3.9 56.3 1.0
CA C:CYS194 4.2 67.0 1.0
CA C:HIS212 4.2 43.8 1.0
CD2 C:HIS212 4.3 64.4 1.0
CA C:CYS191 4.3 60.6 1.0
NE2 C:HIS212 4.3 71.9 1.0
CB C:ILE193 4.6 56.1 1.0
CA C:CYS215 4.8 62.0 1.0
C C:ILE193 4.9 68.1 1.0
C C:CYS194 4.9 76.0 1.0
C C:CYS191 4.9 60.1 1.0
N C:ILE193 5.0 56.6 1.0
O C:HIS212 5.0 81.1 1.0

Zinc binding site 2 out of 2 in 5hvq

Go back to Zinc Binding Sites List in 5hvq
Zinc binding site 2 out of 2 in the Alternative Model of the Mage-G1 Nse-1 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Alternative Model of the Mage-G1 Nse-1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn302

b:97.8
occ:1.00
SG C:CYS231 2.3 0.7 1.0
SG C:CYS207 2.3 96.4 1.0
SG C:CYS228 2.4 90.2 1.0
SG C:CYS204 2.5 79.1 1.0
CB C:CYS204 3.2 82.0 1.0
CB C:CYS228 3.2 86.2 1.0
CB C:CYS231 3.5 90.8 1.0
CB C:CYS207 3.6 89.2 1.0
N C:CYS207 3.7 0.1 1.0
N C:CYS231 4.0 89.3 1.0
CA C:CYS207 4.2 92.4 1.0
CB C:THR206 4.3 0.5 1.0
CA C:CYS231 4.3 92.4 1.0
CA C:CYS228 4.7 79.9 1.0
CG1 C:ILE209 4.7 70.3 1.0
CA C:CYS204 4.7 80.8 1.0
CB C:HIS230 4.7 99.5 1.0
C C:THR206 4.7 0.1 1.0
C C:CYS207 4.7 0.7 1.0
CA C:THR206 4.9 0.9 1.0
CD1 C:ILE209 4.9 66.1 1.0
N C:THR206 4.9 0.6 1.0
CG2 C:THR206 5.0 0.8 1.0
C C:HIS230 5.0 88.9 1.0

Reference:

J.A.Newman, C.D.Cooper, A.K.Roos, H.Aitkenhead, U.C.Oppermann, H.J.Cho, R.Osman, O.Gileadi. Structures of Two Melanoma-Associated Antigens Suggest Allosteric Regulation of Effector Binding. Plos One V. 11 48762 2016.
ISSN: ESSN 1932-6203
PubMed: 26910052
DOI: 10.1371/JOURNAL.PONE.0148762
Page generated: Wed Dec 16 06:20:53 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy