Zinc in PDB 5h0m: Crystal Structure of Deep-Sea Thermophilic Bacteriophage GVE2 Hnh Endonuclease with Zinc Ion

The structure of Crystal Structure of Deep-Sea Thermophilic Bacteriophage GVE2 Hnh Endonuclease with Zinc Ion, PDB code: 5h0m was solved by L.K.Zhang, D.D.Xu, Y.C.Huang, Y.Gong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.52
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	66.264, 66.264, 51.484, 90.00, 90.00, 90.00
R / Rfree (%)	14.4 / 16.8

The binding sites of Zinc atom in the Crystal Structure of Deep-Sea Thermophilic Bacteriophage GVE2 Hnh Endonuclease with Zinc Ion (pdb code 5h0m). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Deep-Sea Thermophilic Bacteriophage GVE2 Hnh Endonuclease with Zinc Ion, PDB code: 5h0m:

Zinc binding site 1 out of 1 in the Crystal Structure of Deep-Sea Thermophilic Bacteriophage GVE2 Hnh Endonuclease with Zinc Ion


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Deep-Sea Thermophilic Bacteriophage GVE2 Hnh Endonuclease with Zinc Ion within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn800 b:15.0 occ:1.00 SG A:CYS79 2.3 16.8 1.0 SG A:CYS76 2.3 13.8 1.0 SG A:CYS117 2.3 15.1 1.0 SG A:CYS114 2.4 15.4 1.0 CB A:CYS117 3.2 13.9 1.0 CB A:CYS76 3.3 13.9 1.0 CB A:CYS79 3.3 16.4 1.0 CB A:CYS114 3.5 14.6 1.0 N A:CYS79 3.7 14.8 1.0 N A:CYS114 4.0 13.3 1.0 CA A:CYS79 4.0 15.8 1.0 N A:CYS117 4.2 15.1 1.0 CA A:CYS114 4.3 14.3 1.0 O A:HOH937 4.3 33.1 1.0 CA A:CYS117 4.3 14.6 1.0 O A:HOH1010 4.4 27.8 1.0 CB A:THR86 4.5 17.8 1.0 OG1 A:THR86 4.6 18.3 1.0 CA A:CYS76 4.7 12.9 1.0 C A:HIS78 4.7 15.3 1.0 CB A:HIS78 4.7 14.5 1.0 O A:HOH1032 4.7 30.7 1.0 CG2 A:THR86 4.7 18.1 1.0 C A:CYS114 4.9 15.9 1.0 O A:CYS114 5.0 14.9 1.0

L.K.Zhang, D.D.Xu, Y.C.Huang, X.Y.Zhu, M.W.Rui, T.Wan, X.Zheng, Y.L.Shen, X.D.Chen, K.S.Ma, Y.Gong. Structural and Functional Characterization of Deep-Sea Thermophilic Bacteriophage GVE2 Hnh Endonuclease Sci Rep V. 7 42542 2017.
ISSN: ESSN 2045-2322
PubMed: 28211904
DOI: 10.1038/SREP42542