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Zinc in PDB 5gof: Truncated Mitofusin-1, Gtp-Bound

Protein crystallography data

The structure of Truncated Mitofusin-1, Gtp-Bound, PDB code: 5gof was solved by Y.L.Cao, S.Gao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.11 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 70.579, 72.461, 95.344, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 21.5

Other elements in 5gof:

The structure of Truncated Mitofusin-1, Gtp-Bound also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Truncated Mitofusin-1, Gtp-Bound (pdb code 5gof). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Truncated Mitofusin-1, Gtp-Bound, PDB code: 5gof:

Zinc binding site 1 out of 1 in 5gof

Go back to Zinc Binding Sites List in 5gof
Zinc binding site 1 out of 1 in the Truncated Mitofusin-1, Gtp-Bound


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Truncated Mitofusin-1, Gtp-Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn903

b:43.9
occ:1.00
ND1 A:HIS144 2.0 46.8 1.0
CD2 A:HIS147 2.2 64.8 1.0
SG A:CYS156 2.3 42.9 1.0
SG A:CYS111 2.3 50.2 1.0
CE1 A:HIS144 2.6 43.0 1.0
NE2 A:HIS147 2.7 68.7 1.0
CB A:CYS156 3.0 43.3 1.0
CB A:CYS111 3.1 48.9 1.0
CG A:HIS144 3.3 58.6 1.0
CG A:HIS147 3.4 77.9 1.0
N A:CYS156 3.6 45.8 1.0
CA A:CYS156 3.8 42.6 1.0
NE2 A:HIS144 3.9 48.5 1.0
CE1 A:HIS147 3.9 81.2 1.0
CB A:HIS144 4.0 63.4 1.0
CD2 A:HIS144 4.2 55.6 1.0
ND1 A:HIS147 4.2 82.7 1.0
CB A:HIS147 4.3 82.2 1.0
C A:CYS156 4.3 41.0 1.0
CA A:HIS144 4.4 69.6 1.0
CA A:CYS111 4.4 47.3 1.0
O A:CYS156 4.4 37.9 1.0
C A:GLY155 4.8 64.5 1.0
C A:HIS147 5.0 98.9 1.0

Reference:

Y.L.Cao, S.Meng, Y.Chen, J.X.Feng, D.D.Gu, B.Yu, Y.J.Li, J.Y.Yang, S.Liao, D.C.Chan, S.Gao. MFN1 Structures Reveal Nucleotide-Triggered Dimerization Critical For Mitochondrial Fusion Nature V. 542 372 2017.
ISSN: ESSN 1476-4687
PubMed: 28114303
DOI: 10.1038/NATURE21077
Page generated: Wed Dec 16 06:19:37 2020

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