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Zinc in PDB 5gae: Rnc in Complex with A Translocating Secyeg

Other elements in 5gae:

The structure of Rnc in Complex with A Translocating Secyeg also contains other interesting chemical elements:

Magnesium (Mg) 323 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Rnc in Complex with A Translocating Secyeg (pdb code 5gae). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Rnc in Complex with A Translocating Secyeg, PDB code: 5gae:

Zinc binding site 1 out of 1 in 5gae

Go back to Zinc Binding Sites List in 5gae
Zinc binding site 1 out of 1 in the Rnc in Complex with A Translocating Secyeg


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Rnc in Complex with A Translocating Secyeg within 5.0Å range:
probe atom residue distance (Å) B Occ
f:Zn101

b:92.5
occ:1.00
ND1 f:HIS33 2.2 0.9 1.0
SG f:CYS27 2.3 84.1 1.0
SG f:CYS11 2.4 95.3 1.0
CE1 f:HIS33 3.0 0.0 1.0
SG f:CYS14 3.4 76.1 1.0
CG f:HIS33 3.4 0.0 1.0
CB f:CYS27 3.7 91.6 1.0
CB f:HIS33 3.9 96.0 1.0
CB f:GLU30 4.1 0.3 1.0
CB f:ASN13 4.1 95.6 1.0
CB f:CYS11 4.1 0.6 1.0
NE2 f:HIS33 4.2 0.5 1.0
N f:GLU30 4.4 0.1 1.0
CD2 f:HIS33 4.4 1.0 1.0
N f:CYS14 4.5 96.0 1.0
CB f:ALA29 4.6 0.6 1.0
CB f:CYS14 4.8 87.7 1.0
CA f:GLU30 4.8 0.5 1.0
O f:GLU30 4.8 0.9 1.0
C f:ASN13 4.9 95.2 1.0
CA f:CYS14 5.0 92.6 1.0
CA f:ASN13 5.0 94.5 1.0
CA f:CYS27 5.0 90.3 1.0

Reference:

A.Jomaa, D.Boehringer, M.Leibundgut, N.Ban. Structures of the E. Coli Translating Ribosome with Srp and Its Receptor and with the Translocon. Nat Commun V. 7 10471 2016.
ISSN: ESSN 2041-1723
PubMed: 26804923
DOI: 10.1038/NCOMMS10471
Page generated: Wed Dec 16 06:19:02 2020

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