Zinc in PDB 5f5e: The Crystal Structure of MLL1 Set Domain with N3816I/Q3867L Mutation

All present enzymatic activity of The Crystal Structure of MLL1 Set Domain with N3816I/Q3867L Mutation:
2.1.1.43;

The structure of The Crystal Structure of MLL1 Set Domain with N3816I/Q3867L Mutation, PDB code: 5f5e was solved by Y.Li, M.Lei, Y.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.07 / 1.80
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	54.574, 54.574, 104.656, 90.00, 90.00, 120.00
R / Rfree (%)	20.2 / 23.6

The binding sites of Zinc atom in the The Crystal Structure of MLL1 Set Domain with N3816I/Q3867L Mutation (pdb code 5f5e). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Crystal Structure of MLL1 Set Domain with N3816I/Q3867L Mutation, PDB code: 5f5e:

Zinc binding site 1 out of 1 in the The Crystal Structure of MLL1 Set Domain with N3816I/Q3867L Mutation


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of MLL1 Set Domain with N3816I/Q3867L Mutation within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn4001 b:53.7 occ:1.00 SG A:CYS3957 2.1 53.9 1.0 SG A:CYS3964 2.3 57.8 1.0 SG A:CYS3909 2.4 63.9 1.0 SG A:CYS3959 2.5 56.7 1.0 CB A:CYS3957 2.5 54.2 1.0 O A:HOH4109 2.7 37.3 1.0 C A:CYS3957 3.5 52.1 1.0 CA A:CYS3957 3.6 51.6 1.0 N A:CYS3959 3.7 55.8 1.0 O A:CYS3957 3.7 55.0 1.0 CB A:CYS3959 3.7 65.2 1.0 O A:HOH4114 3.8 43.7 1.0 CB A:CYS3909 3.8 50.7 1.0 CB A:CYS3964 3.9 58.6 1.0 N A:ASN3958 4.0 51.7 1.0 N A:LYS3966 4.2 64.6 1.0 CA A:CYS3959 4.3 59.6 1.0 N A:CYS3909 4.4 49.8 1.0 N A:ARG3965 4.4 69.9 1.0 N A:CYS3957 4.6 54.5 1.0 CA A:CYS3964 4.6 68.9 1.0 C A:ASN3958 4.7 50.7 1.0 CA A:LYS3966 4.7 61.8 1.0 CA A:ASN3958 4.7 52.4 1.0 CA A:CYS3909 4.7 54.8 1.0 O A:HOH4179 4.8 40.4 1.0 C A:CYS3964 4.8 68.9 1.0 N A:GLY3960 4.9 60.9 1.0 C A:LYS3966 4.9 63.7 1.0 CD2 A:HIS3907 5.0 45.8 1.0

Y.Li, J.Han, Y.Zhang, F.Cao, Z.Liu, S.Li, J.Wu, C.Hu, Y.Wang, J.Shuai, J.Chen, L.Cao, D.Li, P.Shi, C.Tian, J.Zhang, Y.Dou, G.Li, Y.Chen, M.Lei. Structural Basis For Activity Regulation of Mll Family Methyltransferases. Nature V. 530 447 2016.
ISSN: ESSN 1476-4687
PubMed: 26886794
DOI: 10.1038/NATURE16952