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Zinc in PDB 5czw: Crystal Structure of Myroilysin

Protein crystallography data

The structure of Crystal Structure of Myroilysin, PDB code: 5czw was solved by J.Zhou, T.Ran, D.Xu, W.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 51.159, 35.134, 64.258, 90.00, 110.12, 90.00
R / Rfree (%) 20.1 / 25.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Myroilysin (pdb code 5czw). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Myroilysin, PDB code: 5czw:

Zinc binding site 1 out of 1 in 5czw

Go back to Zinc Binding Sites List in 5czw
Zinc binding site 1 out of 1 in the Crystal Structure of Myroilysin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Myroilysin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:16.7
occ:1.00
NE2 A:HIS152 2.1 9.4 1.0
NE2 A:HIS146 2.1 5.8 1.0
NE2 A:HIS142 2.3 7.1 1.0
SG A:CYS28 2.3 7.8 1.0
CD2 A:HIS152 2.9 10.2 1.0
CE1 A:HIS146 3.0 7.6 1.0
CE1 A:HIS152 3.0 12.1 1.0
CD2 A:HIS142 3.0 8.6 1.0
CD2 A:HIS146 3.1 6.7 1.0
CB A:CYS28 3.2 10.1 1.0
CE1 A:HIS142 3.4 10.3 1.0
CG A:HIS152 4.0 9.9 1.0
ND1 A:HIS152 4.0 9.8 1.0
O A:HOH514 4.0 18.7 1.0
ND1 A:HIS146 4.1 7.1 1.0
O A:HOH502 4.2 16.3 1.0
CG A:HIS146 4.2 5.9 1.0
O A:HOH497 4.2 8.2 1.0
CG A:HIS142 4.2 7.4 1.0
OE2 A:GLU143 4.3 8.9 1.0
ND1 A:HIS142 4.4 8.2 1.0
OE1 A:GLU143 4.5 9.3 1.0
CA A:CYS28 4.6 8.9 1.0
CD A:GLU143 4.7 8.4 1.0
CE A:MET208 4.8 11.4 1.0
C A:CYS28 4.9 9.3 1.0

Reference:

D.Xu, J.Zhou, X.Lou, J.He, T.Ran, W.Wang. Myroilysin Is A New Bacterial Member of the M12A Family of Metzincin Metallopeptidases and Activated By A Cysteine-Switch Mechanism J. Biol. Chem. V. 292 5195 2017.
ISSN: ESSN 1083-351X
PubMed: 28188295
DOI: 10.1074/JBC.M116.758110
Page generated: Wed Dec 16 06:07:38 2020

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