Zinc in PDB 5c2y: Crystal Structure of the Saccharomyces Cerevisiae RTR1 (Regulator of Transcription)

All present enzymatic activity of Crystal Structure of the Saccharomyces Cerevisiae RTR1 (Regulator of Transcription):
3.1.3.16;

The structure of Crystal Structure of the Saccharomyces Cerevisiae RTR1 (Regulator of Transcription), PDB code: 5c2y was solved by S.D.Yogesha, S.Irani, Y.J.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.18 / 2.60
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	119.009, 119.009, 69.430, 90.00, 90.00, 90.00
R / Rfree (%)	20.7 / 26.2

The binding sites of Zinc atom in the Crystal Structure of the Saccharomyces Cerevisiae RTR1 (Regulator of Transcription) (pdb code 5c2y). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the Saccharomyces Cerevisiae RTR1 (Regulator of Transcription), PDB code: 5c2y:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of the Saccharomyces Cerevisiae RTR1 (Regulator of Transcription)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Saccharomyces Cerevisiae RTR1 (Regulator of Transcription) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:37.9 occ:1.00 ND1 A:HIS116 2.1 32.0 1.0 SG A:CYS78 2.2 28.6 1.0 SG A:CYS112 2.3 26.3 1.0 SG A:CYS73 2.4 26.0 1.0 CB A:CYS78 2.9 28.5 1.0 CE1 A:HIS116 3.0 32.1 1.0 CB A:CYS73 3.1 25.5 1.0 CG A:HIS116 3.2 28.0 1.0 CB A:CYS112 3.2 24.8 1.0 CB A:HIS116 3.6 26.5 1.0 N A:CYS112 3.9 25.9 1.0 NE2 A:HIS116 4.1 30.5 1.0 CA A:CYS112 4.2 27.7 1.0 CD2 A:HIS116 4.3 24.6 1.0 CA A:CYS78 4.4 28.5 1.0 CB A:LYS80 4.6 31.4 1.0 CA A:CYS73 4.6 25.1 1.0 OG A:SER113 4.8 23.4 1.0 CD A:LYS80 4.8 30.8 1.0 C A:CYS112 4.9 29.5 1.0 C A:CYS78 5.0 32.0 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of the Saccharomyces Cerevisiae RTR1 (Regulator of Transcription)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Saccharomyces Cerevisiae RTR1 (Regulator of Transcription) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn301 b:40.0 occ:1.00 ND1 B:HIS116 2.1 31.6 1.0 SG B:CYS78 2.3 33.1 1.0 SG B:CYS112 2.3 30.6 1.0 SG B:CYS73 2.5 35.1 1.0 CB B:CYS78 3.0 34.1 1.0 CE1 B:HIS116 3.0 28.3 1.0 CG B:HIS116 3.1 26.2 1.0 CB B:CYS73 3.2 33.8 1.0 CB B:HIS116 3.5 27.9 1.0 CB B:CYS112 3.6 31.4 1.0 N B:CYS112 4.0 30.4 1.0 NE2 B:HIS116 4.1 29.7 1.0 CD2 B:HIS116 4.2 23.5 1.0 CA B:CYS112 4.4 31.5 1.0 CA B:CYS78 4.4 36.9 1.0 CB B:LYS80 4.6 31.5 1.0 CA B:CYS73 4.7 33.5 1.0 OG B:SER113 4.9 27.9 1.0 CB B:TYR75 5.0 26.7 1.0

S.Irani, S.D.Yogesha, J.Mayfield, M.Zhang, Y.Zhang, W.L.Matthews, G.Nie, N.A.Prescott, Y.J.Zhang. Structure of Saccharomyces Cerevisiae RTR1 Reveals An Active Site For An Atypical Phosphatase. Sci.Signal. V. 9 RA24 2016.
ISSN: ESSN 1937-9145
PubMed: 26933063
DOI: 10.1126/SCISIGNAL.AAD4805