Zinc in PDB 5c0x: Structure of A 12-Subunit Nuclear Exosome Complex Bound to Structured Rna

The structure of Structure of A 12-Subunit Nuclear Exosome Complex Bound to Structured Rna, PDB code: 5c0x was solved by D.L.Makino, E.Conti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	57.89 / 3.81
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	106.150, 177.390, 299.900, 90.00, 90.00, 90.00
R / Rfree (%)	29.5 / 30

The binding sites of Zinc atom in the Structure of A 12-Subunit Nuclear Exosome Complex Bound to Structured Rna (pdb code 5c0x). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of A 12-Subunit Nuclear Exosome Complex Bound to Structured Rna, PDB code: 5c0x:

Zinc binding site 1 out of 1 in the Structure of A 12-Subunit Nuclear Exosome Complex Bound to Structured Rna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of A 12-Subunit Nuclear Exosome Complex Bound to Structured Rna within 5.0Å range: probe atom residue distance (Å) B Occ J:Zn1101 b:0.5 occ:1.00 NE2 J:HIS184 1.8 0.5 1.0 SG J:CYS47 2.2 0.1 1.0 SG J:CYS55 2.2 0.5 1.0 SG J:CYS52 2.2 0.5 1.0 CE1 J:HIS184 2.8 1.0 1.0 CD2 J:HIS184 2.9 0.6 1.0 CB J:CYS47 3.2 0.1 1.0 CB J:CYS52 3.2 0.1 1.0 CB J:CYS55 3.4 0.3 1.0 ND1 J:HIS184 3.9 0.2 1.0 CG J:HIS184 4.0 0.0 1.0 N J:CYS55 4.1 0.6 1.0 N J:CYS47 4.2 0.8 1.0 CA J:CYS47 4.3 0.5 1.0 CA J:CYS55 4.4 0.5 1.0 CA J:CYS52 4.6 0.7 1.0 CH2 J:TRP180 4.9 0.3 1.0

D.L.Makino, B.Schuch, E.Stegmann, M.Baumgartner, C.Basquin, E.Conti. Rna Degradation Paths in A 12-Subunit Nuclear Exosome Complex. Nature V. 524 54 2015.
ISSN: ESSN 1476-4687
PubMed: 26222026
DOI: 10.1038/NATURE14865