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Zinc in PDB 5bwl: Crystal Structure of SIRT5 in Complex with A Coumarin-Labelled Succinyl Peptide

Protein crystallography data

The structure of Crystal Structure of SIRT5 in Complex with A Coumarin-Labelled Succinyl Peptide, PDB code: 5bwl was solved by W.Gai, H.Jiang, D.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.07 / 1.55
Space group P 21 2 21
Cell size a, b, c (Å), α, β, γ (°) 42.420, 55.536, 124.680, 90.00, 90.00, 90.00
R / Rfree (%) 21.2 / 23.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of SIRT5 in Complex with A Coumarin-Labelled Succinyl Peptide (pdb code 5bwl). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of SIRT5 in Complex with A Coumarin-Labelled Succinyl Peptide, PDB code: 5bwl:

Zinc binding site 1 out of 1 in 5bwl

Go back to Zinc Binding Sites List in 5bwl
Zinc binding site 1 out of 1 in the Crystal Structure of SIRT5 in Complex with A Coumarin-Labelled Succinyl Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of SIRT5 in Complex with A Coumarin-Labelled Succinyl Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:19.7
occ:1.00
SG A:CYS169 2.3 17.6 1.0
SG A:CYS207 2.3 16.5 1.0
SG A:CYS212 2.3 18.3 1.0
SG A:CYS166 2.3 16.1 1.0
HB2 A:CYS207 3.0 25.2 1.0
CB A:CYS207 3.0 21.0 1.0
HB3 A:CYS207 3.0 25.2 1.0
HB3 A:CYS212 3.1 24.5 1.0
HB2 A:CYS166 3.1 22.2 1.0
CB A:CYS166 3.1 18.5 1.0
HB3 A:CYS166 3.1 22.2 1.0
H A:CYS169 3.1 24.8 1.0
CB A:CYS212 3.2 20.4 1.0
HB3 A:CYS169 3.2 23.3 1.0
HB2 A:CYS212 3.4 24.5 1.0
CB A:CYS169 3.4 19.4 1.0
H A:GLY214 3.8 28.6 1.0
N A:CYS169 3.8 20.6 1.0
HB2 A:GLU209 3.9 22.6 1.0
HB2 A:SER168 3.9 28.0 1.0
HB2 A:CYS169 4.1 23.3 1.0
CA A:CYS169 4.2 17.6 1.0
HG3 A:GLU209 4.2 23.2 1.0
HB A:VAL171 4.3 19.6 1.0
H A:GLY213 4.4 32.3 1.0
H A:VAL171 4.4 20.1 1.0
HG2 A:GLU209 4.4 23.2 1.0
HA3 A:GLY214 4.4 30.7 1.0
CA A:CYS207 4.5 16.2 1.0
H A:SER168 4.5 24.1 1.0
N A:GLY214 4.6 23.8 1.0
CA A:CYS166 4.6 18.0 1.0
CA A:CYS212 4.6 20.5 1.0
CG A:GLU209 4.6 19.4 1.0
H A:GLY170 4.6 25.5 1.0
CB A:GLU209 4.7 18.8 1.0
H A:GLU209 4.7 22.6 1.0
N A:GLY213 4.8 26.9 1.0
CB A:SER168 4.8 23.3 1.0
HA A:CYS207 4.8 19.4 1.0
C A:CYS169 4.8 22.9 1.0
HA A:CYS166 4.9 21.6 1.0
HA A:CYS212 4.9 24.6 1.0
O A:HOH830 4.9 20.4 1.0
C A:CYS212 5.0 27.3 1.0
C A:SER168 5.0 24.8 1.0
HA A:CYS169 5.0 21.2 1.0
N A:GLY170 5.0 21.2 1.0
CA A:GLY214 5.0 25.6 1.0

Reference:

W.Gai, H.Jiang, D.Liu. Crystal Structure of SIRT5 in Complex with A Coumarin-Labelled Succinyl Peptide To Be Published.
Page generated: Wed Dec 16 06:05:17 2020

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