Zinc in PDB 5afs: Structure of Zn-Bound Periplasmic Metal Binding Protein From Candidatus Liberibacter Asiaticus

The structure of Structure of Zn-Bound Periplasmic Metal Binding Protein From Candidatus Liberibacter Asiaticus, PDB code: 5afs was solved by N.Sharma, P.Selvakumar, P.Kumar, A.K.Sharma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.24 / 2.22
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	94.370, 94.370, 94.430, 90.00, 90.00, 120.00
R / Rfree (%)	15.3 / 18.1

The binding sites of Zinc atom in the Structure of Zn-Bound Periplasmic Metal Binding Protein From Candidatus Liberibacter Asiaticus (pdb code 5afs). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of Zn-Bound Periplasmic Metal Binding Protein From Candidatus Liberibacter Asiaticus, PDB code: 5afs:

Zinc binding site 1 out of 1 in the Structure of Zn-Bound Periplasmic Metal Binding Protein From Candidatus Liberibacter Asiaticus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Zn-Bound Periplasmic Metal Binding Protein From Candidatus Liberibacter Asiaticus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1281 b:13.3 occ:1.00 OE2 A:GLU172 2.0 14.9 1.0 OD2 A:ASP247 2.0 13.7 1.0 OD1 A:ASP247 2.0 13.4 1.0 NE2 A:HIS106 2.1 10.0 1.0 NE2 A:HIS39 2.1 17.9 1.0 CG A:ASP247 2.4 11.2 1.0 OE1 A:GLU172 2.5 17.6 1.0 CD A:GLU172 2.6 16.8 1.0 CE1 A:HIS39 3.0 17.1 1.0 CD2 A:HIS106 3.0 11.0 1.0 CE1 A:HIS106 3.1 11.1 1.0 CD2 A:HIS39 3.1 15.6 1.0 CB A:ASP247 3.9 11.6 1.0 ND2 A:ASN193 4.0 18.0 1.0 CG A:GLU172 4.1 16.1 1.0 ND1 A:HIS39 4.1 18.1 1.0 ND1 A:HIS106 4.2 12.0 1.0 CG A:HIS39 4.2 18.8 1.0 CG A:HIS106 4.2 10.8 1.0 N A:ASN193 4.6 17.7 1.0 O A:HOH2192 4.6 12.4 1.0 CG A:ASN193 4.6 23.3 1.0 CA A:ASP247 4.8 12.4 1.0 CB A:ASN193 4.8 19.6 1.0 O A:HOH2061 4.8 46.8 1.0 CG2 A:ILE192 4.8 20.8 1.0

N.Sharma, P.Selvakumar, G.Saini, A.Warghane, D.K.Ghosh, A.K.Sharma. Crystal Structure Analysis in Zn(2+)-Bound State and Biophysical Characterization of Clas-ZNUA2. Biochim. Biophys. Acta V.1864 1649 2016.
ISSN: ISSN 0006-3002
PubMed: 27570147
DOI: 10.1016/J.BBAPAP.2016.08.016