Zinc in PDB 4zpj: Abc Transporter Substrate-Binding Protein From Sphaerobacter Thermophilus

The structure of Abc Transporter Substrate-Binding Protein From Sphaerobacter Thermophilus, PDB code: 4zpj was solved by J.Osipiuk, J.Holowicki, S.Clancy, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.30 / 2.24
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	46.818, 88.531, 99.397, 90.00, 90.00, 90.00
R / Rfree (%)	17.1 / 22.2

The structure of Abc Transporter Substrate-Binding Protein From Sphaerobacter Thermophilus also contains other interesting chemical elements:

Chlorine

(Cl)

8 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 13;

Binding sites:

The binding sites of Zinc atom in the Abc Transporter Substrate-Binding Protein From Sphaerobacter Thermophilus (pdb code 4zpj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 13 binding sites of Zinc where determined in the Abc Transporter Substrate-Binding Protein From Sphaerobacter Thermophilus, PDB code: 4zpj:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 13 in the Abc Transporter Substrate-Binding Protein From Sphaerobacter Thermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Abc Transporter Substrate-Binding Protein From Sphaerobacter Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:59.3 occ:1.00 CL A:CL514 2.1 60.6 1.0 ND1 A:HIS355 2.4 45.8 1.0 CL A:CL515 3.0 71.4 1.0 CG A:HIS355 3.2 43.8 1.0 CB A:HIS355 3.4 46.7 1.0 CE1 A:HIS355 3.4 44.8 1.0 CA A:HIS355 3.9 51.2 1.0 CD2 A:HIS355 4.3 44.4 1.0 O A:HIS355 4.4 58.4 1.0 NE2 A:HIS355 4.4 46.5 1.0 CD A:ARG102 4.4 40.3 1.0 C A:HIS355 4.5 54.5 1.0 CD1 A:ILE358 4.7 49.2 1.0 O A:ARG354 4.8 50.6 1.0

Zinc binding site 2 out of 13 in the Abc Transporter Substrate-Binding Protein From Sphaerobacter Thermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Abc Transporter Substrate-Binding Protein From Sphaerobacter Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn502 b:42.5 occ:1.00 OD2 A:ASP445 2.1 36.1 1.0 CL A:CL516 2.4 57.9 1.0 CL A:CL517 2.5 58.8 1.0 CG A:ASP445 3.0 35.1 1.0 OD1 A:ASP445 3.2 36.6 1.0 CB A:ASP445 4.4 34.0 1.0 CB A:SER448 4.5 55.3 1.0 NE2 A:HIS410 4.8 37.6 1.0

Zinc binding site 3 out of 13 in the Abc Transporter Substrate-Binding Protein From Sphaerobacter Thermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Abc Transporter Substrate-Binding Protein From Sphaerobacter Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn503 b:46.6 occ:1.00 OD1 A:ASP443 2.0 42.2 1.0 CL A:CL518 2.4 66.0 1.0 OD2 A:ASP443 2.5 52.0 1.0 CG A:ASP443 2.6 40.1 1.0 CL A:CL519 2.6 70.6 1.0 O A:HOH624 3.7 42.2 1.0 CB A:ASP443 4.1 37.4 1.0 CB A:ASN406 4.5 39.3 1.0 N A:ASP443 4.7 35.8 1.0 CA A:ASP443 4.7 36.9 1.0 NE A:ARG408 4.8 46.1 1.0 OD1 A:ASN406 4.9 48.5 1.0 CB A:PRO442 4.9 35.6 1.0

Zinc binding site 4 out of 13 in the Abc Transporter Substrate-Binding Protein From Sphaerobacter Thermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Abc Transporter Substrate-Binding Protein From Sphaerobacter Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn504 b:66.1 occ:1.00 OE1 A:GLU214 2.1 60.1 1.0 CL A:CL521 2.7 88.8 1.0 CD A:GLU214 2.9 53.7 1.0 OE2 A:GLU214 3.1 50.0 1.0 CL A:CL520 3.1 75.8 1.0 O A:ALA245 4.2 50.7 1.0 CB A:ALA245 4.2 46.7 1.0 CG A:GLU214 4.4 49.4 1.0 CA A:ALA245 4.5 47.1 1.0 CD1 A:TYR213 4.5 46.6 1.0 CE1 A:TYR213 4.6 48.2 1.0 C A:ALA245 4.8 48.9 1.0

Zinc binding site 5 out of 13 in the Abc Transporter Substrate-Binding Protein From Sphaerobacter Thermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Abc Transporter Substrate-Binding Protein From Sphaerobacter Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn505 b:47.3 occ:0.70 OD2 A:ASP261 1.8 52.2 1.0 CG A:ASP261 2.7 52.2 1.0 OD1 A:ASP261 2.9 49.0 1.0 CB A:ASP261 4.2 51.9 1.0 CA A:GLY263 4.5 59.5 1.0 CD A:PRO264 4.7 66.0 1.0 N A:GLY263 5.0 56.4 1.0

Zinc binding site 6 out of 13 in the Abc Transporter Substrate-Binding Protein From Sphaerobacter Thermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Abc Transporter Substrate-Binding Protein From Sphaerobacter Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn506 b:72.0 occ:1.00 OD1 A:ASP227 2.0 58.6 1.0 O A:HOH653 2.0 60.7 1.0 NE2 A:HIS232 2.2 62.9 1.0 O A:HOH663 2.2 52.3 1.0 CG A:ASP227 3.1 58.8 1.0 CE1 A:HIS232 3.1 63.5 1.0 CD2 A:HIS232 3.2 51.8 1.0 OD2 A:ASP227 3.5 60.5 1.0 ND1 A:HIS232 4.2 59.4 1.0 CG A:HIS232 4.3 55.6 1.0 CB A:ASP227 4.4 56.2 1.0 C A:ASP227 4.6 51.5 1.0 CA A:ASP227 4.6 51.4 1.0 O A:ASP227 4.8 53.2 1.0 N A:TYR228 4.9 49.4 1.0

Zinc binding site 7 out of 13 in the Abc Transporter Substrate-Binding Protein From Sphaerobacter Thermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Abc Transporter Substrate-Binding Protein From Sphaerobacter Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn507 b:68.0 occ:1.00 O A:HOH636 1.6 49.1 1.0 OE2 A:GLU125 2.3 51.9 1.0 O A:HOH651 2.4 56.4 1.0 OE1 A:GLU125 2.6 50.7 1.0 CD A:GLU125 2.8 48.9 1.0 NE2 A:GLN140 3.8 75.8 1.0 O A:HOH658 3.9 45.0 1.0 NZ A:LYS137 4.1 56.1 1.0 CG A:GLU125 4.3 46.5 1.0 OE1 A:GLN140 4.6 79.8 1.0 CD A:GLN140 4.6 74.4 1.0 O A:ILE124 4.7 47.2 1.0 CE A:LYS137 4.8 56.3 1.0

Zinc binding site 8 out of 13 in the Abc Transporter Substrate-Binding Protein From Sphaerobacter Thermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Abc Transporter Substrate-Binding Protein From Sphaerobacter Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn508 b:49.6 occ:1.00 OE2 A:GLU412 2.1 49.5 1.0 OE1 A:GLU412 2.4 44.3 1.0 CD A:GLU412 2.6 42.4 1.0 CG A:GLU412 4.1 43.6 1.0 CB A:GLU412 4.9 40.6 1.0

Zinc binding site 9 out of 13 in the Abc Transporter Substrate-Binding Protein From Sphaerobacter Thermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Abc Transporter Substrate-Binding Protein From Sphaerobacter Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn509 b:82.1 occ:1.00 OE1 A:GLU270 2.0 91.5 1.0 O A:HOH669 2.5 48.0 1.0 CD A:GLU270 2.6 83.8 1.0 OE2 A:GLU270 2.7 91.3 1.0 CG A:GLU270 3.9 77.1 1.0 CB A:GLU270 4.6 70.4 1.0

Zinc binding site 10 out of 13 in the Abc Transporter Substrate-Binding Protein From Sphaerobacter Thermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Abc Transporter Substrate-Binding Protein From Sphaerobacter Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn510 b:80.0 occ:1.00 OE1 A:GLU343 2.2 65.7 1.0 O A:HOH665 2.5 54.1 1.0 OE2 A:GLU346 2.5 70.7 1.0 OE1 A:GLU346 2.9 80.0 1.0 CD A:GLU343 2.9 68.2 1.0 CD A:GLU346 3.0 63.2 1.0 OE2 A:GLU343 3.0 75.1 1.0 CG A:GLU346 4.4 56.0 1.0 CG A:GLU343 4.4 57.2 1.0 CB A:GLU343 4.9 46.5 1.0 CB A:GLU346 5.0 49.2 1.0 NH1 A:ARG372 5.0 57.4 1.0

J.Osipiuk, J.Holowicki, S.Clancy, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg). Abc Transporter Substrate-Binding Protein From Sphaerobacter Thermophilus. To Be Published.